CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11486
KRH36502

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44620.1	KRH11486	AT4G04320.1	21798944
AT2G44620.1	KRH36502	AT4G04320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40249	Soybean	mitochondrion	100.0	100.0
VIT_15s0021g00570.t01	Wine grape	mitochondrion	80.17	75.0
CDX83424	Canola	mitochondrion	73.28	70.83
CDX95607	Canola	mitochondrion	73.28	70.83
Bra000356.1-P	Field mustard	mitochondrion	71.55	69.17
AT2G44620.1	Thale cress	mitochondrion	71.55	68.03
GSMUA_Achr2P00030_001	Banana	mitochondrion	73.28	68.0
Bra004851.1-P	Field mustard	mitochondrion	71.55	66.4
CDX74673	Canola	mitochondrion	71.55	66.4
CDY48242	Canola	mitochondrion	71.55	66.4
PGSC0003DMT400004235	Potato	mitochondrion	66.38	63.11
Solyc01g088570.2.1	Tomato	mitochondrion	65.52	62.3
TraesCS7A01G181900.2	Wheat	mitochondrion	64.66	58.14
Os07t0222800-01	Rice	mitochondrion	65.52	58.02
TraesCS7D01G183300.1	Wheat	mitochondrion	65.52	57.58
TraesCS7B01G086700.1	Wheat	mitochondrion	65.52	57.58
HORVU7Hr1G037330.2	Barley	mitochondrion	65.52	57.58
EER96074	Sorghum	mitochondrion	65.52	56.72
Zm00001d019186_P001	Maize	mitochondrion	61.21	53.38
KRH40273	Soybean	nucleus	50.0	45.31
KRH00953	Soybean	mitochondrion	50.0	45.31
KRH37350	Soybean	extracellular, golgi	27.59	41.03
KRH11585	Soybean	plastid	37.07	31.16
KRH36601	Soybean	cytosol	37.07	28.1

Protein Annotations

Gene3D:1.10.1200.10	EntrezGene:100306438	EntrezGene:100818873	MapMan:5.1.5.1	InterPro:ACP-like_sf	EMBL:ACUP02006032
EMBL:ACUP02011485	InterPro:Acyl_carrier	EMBL:BT090543	UniProt:C6SZE2	EnsemblPlantsGene:GLYMA_18G245900	GO:GO:0000035
GO:GO:0000036	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009245	GO:GO:0009987	GO:GO:0031177	InterPro:IPR009081
InterPro:IPR036736	EnsemblPlants:KRH00978	ProteinID:KRH00978	ProteinID:KRH00978.1	ProteinID:KRH40249.1	HAMAP:MF_01217
PFAM:PD000887	PFAM:PF00550	InterPro:PP-bd_ACP	PFscan:PS50075	PANTHER:PTHR20863	PANTHER:PTHR20863:SF41
SUPFAM:SSF47336	TIGRFAMs:TIGR00517	UniParc:UPI0001B1501F	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:53353413..53355664

Molecular Weight (calculated)

13031.7 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.259

Length

116 amino acids

Sequence
(BLAST)

001: MALRAAVLRH VRVPLQAAPK LQPWRAMSSH GDDHLSKEEV VERVLAVVKD FPKVDPSRVS PDVHFQKDLG LDSLDNVEIV MALEEEFKLE IPDKEADKID
101: SCHLAIEYIS NHPMAG

Best Arabidopsis Sequence Match ( AT2G44620.1 )
(BLAST)

001: MALRNAILRH LRVPVQTLGL NQSKIGFLGT IRSFSSHDDH LSREAVVDRV LDVVKSFPKV DPSKVTPEVH FQNDLGLDSL DTVEIVMAIE EEFKLEIPDK
101: EADKIDSCSL AIEYVYNHPM SS

Arabidopsis Description

MTACP1Acyl carrier protein 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P53665]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.