CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH11287
KRH16140
KRH20991
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	KRH02173	AT4G15560.1	24104567
AT4G04320.1	KRH11287	AT4G15560.1	24104567
AT4G04320.1	KRH16140	AT4G15560.1	24104567
AT4G04320.1	KRH20991	AT4G15560.1	24104567
AT4G04320.1	KRH50940	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36502	Soybean	mitochondrion	93.11	92.76
VIT_10s0116g00870.t01	Wine grape	mitochondrion	73.56	71.3
AT4G04320.1	Thale cress	mitochondrion	66.67	69.11
CDX90855	Canola	mitochondrion	64.99	65.97
CDY21296	Canola	mitochondrion	64.99	65.97
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	23.84	61.24
PGSC0003DMT400055273	Potato	plastid, vacuole	39.85	60.97
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	11.73	60.58
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	26.26	60.52
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	54.75	57.2
Solyc02g036300.2.1	Tomato	mitochondrion	11.17	57.14
TraesCS5B01G201000.1	Wheat	mitochondrion	53.63	56.58
TraesCS5A01G202500.1	Wheat	mitochondrion	53.26	56.19
TraesCS5D01G208800.1	Wheat	mitochondrion	53.07	55.99
Zm00001d005711_P005	Maize	mitochondrion	53.63	55.92
OQU89456	Sorghum	mitochondrion, plastid	54.0	55.88
HORVU5Hr1G060110.16	Barley	plastid	54.0	51.79
Solyc02g036310.2.1	Tomato	mitochondrion	11.17	51.28
GSMUA_AchrUn_...	Banana	mitochondrion	25.88	50.73
Bra000788.1-P	Field mustard	mitochondrion	63.5	36.51

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	EntrezGene:100802836	Gene3D:3.40.630.150	MapMan:5.1.2.4
EMBL:ACUP02009212	EnsemblPlantsGene:GLYMA_15G111500	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050080	UniProt:I1MFK5
InterPro:IPR038351	EnsemblPlants:KRH11486	ProteinID:KRH11486	ProteinID:KRH11486.1	InterPro:MCD_N	InterPro:MCD_N_sf
InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	PFAM:PF05292	PFAM:PF17408	PANTHER:PTHR28641	UniParc:UPI0002961C4C

Description

hypothetical protein

Coordinates

chr15:-:8729687..8736090

Molecular Weight (calculated)

60413.3 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.304

Length

537 amino acids

Sequence
(BLAST)

001: MNKKALSILM RARMKPNDRT SLSLSPIPLT NATSQMQQQN SRQNGSPGDG NSAPNDSGNS EREFKRVRAS MHSAISMSKT EVLDDVLNNF SEGYLNLSHE
101: NRRKLLLVLA REYDLNRSQV RELIKQYLGL EHPADKAQVS GSEDEGLFSS FYRIERNLRH ALQPVYEVLF ERLNTHPGGL RTLSILREDI LSILAEENIA
201: SLRALDSYLM EKFITWLSPA ALELHQITWD DPASLLEKIV AYEAVHPISN LLDLKRRLGI GRRCFGYLHP AIPGEPLIFI EVALLKDIAQ TIQEVLWDNP
301: PIPESEATCA LFYSISSTQP GLAGINLGKF LIKRVVTQVK REMPHISTFA TLSPIPGFIS WLLSKLASQR LLAEGDNLSQ PQAEGSSSTF YENILKPEEE
401: EALMSLPKDI AAGENGMDVM FNLLTSTSYK WIHSPELLSA LKSPLMRLCA RYLLQEKKRG KALDSVANFH LQNGAMVERI NWMADRSDKG LSQSGGIMVN
501: YVYRLDHIEE YAQSYFNNGE IHTSSDLHRW VDATDTA

Best Arabidopsis Sequence Match ( AT4G04320.1 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL
101: LVLAKEYDVN REQVRELVKQ YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENTPS LRTLDSFLKE
201: KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS VPGEPLIFIE VALMETVAQT IQEVLWDNPP IPENQATCAL
301: FYSISSTQPG LAGINLGKFL IKRVITLVKK DMPHVSTFAT LSPIPGFMQW LLSKLSSQSR FAEDERGTQS NSPSSTFSEK VLLPEEEHAL MTLSDESSSG
401: SNGMEVLLNL LSVKNCDWAT SPRLLPVLEP ILMRLCARYL LQEKKRGKAL DSVANFHLQN GAMVERINWM ADRSEKGIRQ SGGIMVNYVY RLENIEDYAQ
501: SYFGSGKIHA SPGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.