CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	CDX90583	AT4G15560.1	24104567
AT4G04320.1	CDY09752	AT4G15560.1	24104567
AT4G04320.1	CDY52177	AT4G15560.1	24104567
AT4G04320.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90855	Canola	mitochondrion	97.35	97.35
AT4G04320.1	Thale cress	mitochondrion	87.33	89.19
CDY16674	Canola	cytosol	6.24	66.0
KRH36502	Soybean	mitochondrion	66.54	65.31
KRH11486	Soybean	mitochondrion	65.97	64.99
VIT_10s0116g00870.t01	Wine grape	mitochondrion	66.54	63.54
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	26.65	60.52
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	23.44	59.33
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	11.53	58.65
CDX94547	Canola	cytosol, mitochondrion, nucleus	20.79	57.89
PGSC0003DMT400055273	Potato	plastid, vacuole	37.05	55.84
TraesCS5B01G201000.1	Wheat	mitochondrion	53.31	55.4
Zm00001d005711_P005	Maize	mitochondrion	53.88	55.34
OQU89456	Sorghum	mitochondrion, plastid	54.25	55.3
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	53.69	55.25
Solyc02g036300.2.1	Tomato	mitochondrion	10.96	55.24
TraesCS5A01G202500.1	Wheat	mitochondrion	53.12	55.21
TraesCS5D01G208800.1	Wheat	mitochondrion	52.93	55.01
Bra000788.1-P	Field mustard	mitochondrion	92.06	52.14
HORVU5Hr1G060110.16	Barley	plastid	53.88	50.89
GSMUA_AchrUn_...	Banana	mitochondrion	24.76	47.81
Solyc02g036310.2.1	Tomato	mitochondrion	9.26	41.88

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	Gene3D:3.40.630.150	MapMan:5.1.2.4	GO:A0A078G7A4
UniProt:A0A078G7A4	EnsemblPlants:CDY21296	ProteinID:CDY21296	ProteinID:CDY21296.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0050080	EnsemblPlantsGene:GSBRNA2T00015627001	InterPro:IPR038351	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC
InterPro:Malonyl_CoA_deC_C	PFAM:PF05292	PFAM:PF17408	PANTHER:PTHR28641	UniPathway:UPA00340	UniParc:UPI0004EECD79
SEG:seg	:	:	:	:	:

Description

BnaC03g29800DBnaC03g29800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7A4]

Coordinates

chrLK032119:+:321434..324560

Molecular Weight (calculated)

59231.0 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.281

Length

529 amino acids

Sequence
(BLAST)

001: MSKKKLAILL RARMRSSNHS AKSSLSQFTK EIPSNPQDNQ SGDHILRNSS NFGTNGRVYD VVRETMHTAI SATKTGGSDI TLNDFEEGYF SLSLEDRGKL
101: LLALAKEYDV NREQVRELIK QYLGLETPSS DDYAELHSSP KKEASSSVFY RVEWSLRHAL KPTYETFFER LNTHPGGLQF LSILRADLLL ILTKENMPSL
201: RALDSYLKEK LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSI PGEPLIFIEV ALMETVAQTI QEVLWDNPPI
301: PENQATCALF YSISSTQPGL AGINLGKFLI KRVITLVKKE MPHVSTFATL SPIPGYMQWL LSKLSSQSRF AEEERGGGTQ SNPSSSTFSE KVLLPGEEQA
401: LMSLSDDSSS GSNGMEVLLN LLSAKNCDWA TSPRILPVLE PILMRLCARY LLQEKKRGKA LDSVANFHLQ NGAMVERINW MADRSEKGIH QSGGIMVNYV
501: YRLENIEDFA QSYFGSGQIH ASPGIHSRL

Best Arabidopsis Sequence Match ( AT4G04320.1 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL
101: LVLAKEYDVN REQVRELVKQ YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENTPS LRTLDSFLKE
201: KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS VPGEPLIFIE VALMETVAQT IQEVLWDNPP IPENQATCAL
301: FYSISSTQPG LAGINLGKFL IKRVITLVKK DMPHVSTFAT LSPIPGFMQW LLSKLSSQSR FAEDERGTQS NSPSSTFSEK VLLPEEEHAL MTLSDESSSG
401: SNGMEVLLNL LSVKNCDWAT SPRLLPVLEP ILMRLCARYL LQEKKRGKAL DSVANFHLQN GAMVERINWM ADRSEKGIRQ SGGIMVNYVY RLENIEDYAQ
501: SYFGSGKIHA SPGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.