Factsheet for GSMUA_AchrUn_randomP18400_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 2
extracellular 2
nucleus 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT4G04320.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055273	Potato	plastid, vacuole	58.8	39.03
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	62.23	28.21
TraesCS5D01G208800.1	Wheat	mitochondrion	61.37	28.09
TraesCS5B01G201000.1	Wheat	mitochondrion	61.37	28.09
TraesCS5A01G202500.1	Wheat	mitochondrion	61.37	28.09
Zm00001d005711_P005	Maize	mitochondrion	61.37	27.77
OQU89456	Sorghum	mitochondrion, plastid	61.8	27.75
Solyc02g036300.2.1	Tomato	mitochondrion	12.45	27.62
AT4G04320.1	Thale cress	mitochondrion	60.09	27.03
CDY21296	Canola	mitochondrion	60.52	26.65
CDX90855	Canola	mitochondrion	60.52	26.65
KRH36502	Soybean	mitochondrion	60.94	26.35
KRH11486	Soybean	mitochondrion	60.52	26.26
VIT_10s0116g00870.t01	Wine grape	mitochondrion	60.52	25.45
HORVU5Hr1G060110.16	Barley	plastid	60.94	25.36
CDX94547	Canola	cytosol, mitochondrion, nucleus	14.16	17.37
Bra000788.1-P	Field mustard	mitochondrion	60.09	14.99
Solyc02g036310.2.1	Tomato	mitochondrion	3.43	6.84
GSMUA_AchrUn_...	Banana	mitochondrion	4.72	4.01
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	0.43	0.96
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	0.86	0.96

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	Gene3D:3.40.630.150	MapMan:5.1.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0050080	EnsemblPlantsGene:GSMUA_AchrUn_randomG18400_001	EnsemblPlants:GSMUA_AchrUn_randomP18400_001	EnsemblPlants:GSMUA_AchrUn_randomT18400_001	InterPro:IPR038351
UniProt:M0UA99	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	PFAM:PF05292
PFAM:PF17408	PANTHER:PTHR28641	PANTHER:PTHR28641:SF1	SignalP:SignalP-noTM	UniParc:UPI000294D676	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18400_001]

Coordinates

chrchrUn_random:+:87667883..87680940

Molecular Weight (calculated)

26237.1 Da

IEP (calculated)

6.397

GRAVY (calculated)

0.233

Length

233 amino acids

Sequence
(BLAST)

001: MTMAAAPAHG GPLHPALLTR FFVLLAFSLE NRVLEDGGIL AVFYRMERNL RDALKPMYAG FFERLNAHPG GLKLLTVLRA DLLSQLAKEN VPSLRALETY
101: LKEKLITWLS PASLELHQIT WDDSASLLEK IVAYEAVHPI RNLLDLKRRL SEGHRCFGYL HPAIPGEPLI FIEVALLKDV ATSIQEVLWD SPPTPEFEAT
201: CALLYSISAT QASWDLILIL WKFVFLSQNS FLQ

Best Arabidopsis Sequence Match ( AT4G04320.1 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL
101: LVLAKEYDVN REQVRELVKQ YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENTPS LRTLDSFLKE
201: KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS VPGEPLIFIE VALMETVAQT IQEVLWDNPP IPENQATCAL
301: FYSISSTQPG LAGINLGKFL IKRVITLVKK DMPHVSTFAT LSPIPGFMQW LLSKLSSQSR FAEDERGTQS NSPSSTFSEK VLLPEEEHAL MTLSDESSSG
401: SNGMEVLLNL LSVKNCDWAT SPRLLPVLEP ILMRLCARYL LQEKKRGKAL DSVANFHLQN GAMVERINWM ADRSEKGIRQ SGGIMVNYVY RLENIEDYAQ
501: SYFGSGKIHA SPGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.