Factsheet for PGSC0003DMT400055277

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	PGSC0003DMT400058821	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	40.19	80.77
GSMUA_AchrUn_...	Banana	mitochondrion	56.46	43.07
Solyc02g036300.2.1	Tomato	mitochondrion	19.62	39.05
CDX94547	Canola	cytosol, mitochondrion, nucleus	26.32	28.95
VIT_10s0116g00870.t01	Wine grape	mitochondrion	65.07	24.55
AT4G04320.1	Thale cress	mitochondrion	60.29	24.32
KRH11486	Soybean	mitochondrion	61.24	23.84
CDX90855	Canola	mitochondrion	59.33	23.44
CDY21296	Canola	mitochondrion	59.33	23.44
KRH36502	Soybean	mitochondrion	58.85	22.82
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	55.5	22.57
TraesCS5B01G201000.1	Wheat	mitochondrion	54.07	22.2
OQU89456	Sorghum	mitochondrion, plastid	55.02	22.16
Zm00001d005711_P005	Maize	mitochondrion	54.55	22.14
TraesCS5D01G208800.1	Wheat	mitochondrion	53.59	22.0
TraesCS5A01G202500.1	Wheat	mitochondrion	53.11	21.81
HORVU5Hr1G060110.16	Barley	plastid	54.07	20.18
Bra000788.1-P	Field mustard	mitochondrion	55.5	12.42
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	0.96	0.86
PGSC0003DMT400055273	Potato	plastid, vacuole	0.48	0.28
Solyc02g036310.2.1	Tomato	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055277	EnsemblPlantsGene:PGSC0003DMG402021462	Gene3D:3.40.630.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050080
InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	PANTHER:PTHR28641	PFAM:PF05292
PGSC:PGSC0003DMG402021462	SEG:seg	UniParc:UPI000294A9A5	UniProt:M1BXP9	MapMan:5.1.2.4	:

Description

Malonyl-CoA decarboxylase [Source:PGSC_GENE;Acc:PGSC0003DMG402021462]

Coordinates

chr2:-:17673011..17680082

Molecular Weight (calculated)

23330.0 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.385

Length

209 amino acids

Sequence
(BLAST)

001: MQPGLSGINL GKFLIKRVVD VVKKDMPNIC VFATLSPIPG YRQWMLSKLA SSEMTGSAFK EILLRPEEEK ALMDASGGSD LGSSGIEVMW NVLTSKNHEW
101: TNSPNLVSAL RTPMMRLCAR YLMKEKKRGK ALDSVANFHL QNGAMIGRLN WMADRSQKGL TQSAGIMVNY IYRLDNIEDS AQAYQNEGHI ESSSDFRSYI
201: EDDNGEKAD

Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.