Factsheet for VIT_10s0116g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	VIT_05s0020g02130.t01	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36502	Soybean	mitochondrion	71.66	73.65
KRH11486	Soybean	mitochondrion	71.3	73.56
AT4G04320.1	Thale cress	mitochondrion	64.8	69.31
CDX90855	Canola	mitochondrion	63.54	66.54
CDY21296	Canola	mitochondrion	63.54	66.54
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	24.55	65.07
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	11.91	63.46
PGSC0003DMT400055273	Potato	plastid, vacuole	39.53	62.39
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	25.45	60.52
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	54.87	59.14
Solyc02g036300.2.1	Tomato	mitochondrion	11.01	58.1
TraesCS5B01G201000.1	Wheat	mitochondrion	53.25	57.96
TraesCS5D01G208800.1	Wheat	mitochondrion	52.71	57.37
TraesCS5A01G202500.1	Wheat	mitochondrion	52.71	57.37
Zm00001d005711_P005	Maize	mitochondrion	52.53	56.5
OQU89456	Sorghum	mitochondrion, plastid	52.53	56.07
Solyc02g036310.2.1	Tomato	mitochondrion	11.73	55.56
GSMUA_AchrUn_...	Banana	mitochondrion	26.9	54.38
CDX94547	Canola	cytosol, mitochondrion, nucleus	18.05	52.63
HORVU5Hr1G060110.16	Barley	plastid	52.89	52.32
Bra000788.1-P	Field mustard	mitochondrion	61.91	36.72

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	EntrezGene:100246958	wikigene:100246958	Gene3D:3.40.630.150
MapMan:5.1.2.4	ProteinID:CBI23194	ProteinID:CBI23194.3	UniProt:E0CVN3	EMBL:FN595248	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006464
GO:GO:0006468	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0008654
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016780	GO:GO:0019538	GO:GO:0050080	InterPro:IPR038351	EntrezGene:LOC100246958
wikigene:LOC100246958	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	PFAM:PF05292
PFAM:PF17408	PANTHER:PTHR28641	UniParc:UPI0001BE2169	ArrayExpress:VIT_10s0116g00870	EnsemblPlantsGene:VIT_10s0116g00870	EnsemblPlants:VIT_10s0116g00870.t01
RefSeq:XP_002264414	RefSeq:XP_002264414.1	RefSeq:XP_010655364.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:402309..412458

Molecular Weight (calculated)

62501.0 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.286

Length

554 amino acids

Sequence
(BLAST)

001: MNKKGLAILM RTRMKPTNPS ERSLFPAANE ANKLVSSSEI NQSNGSIARL AREEKNKSYS QKLNSSGNTY REFEFVRETM HSAISMNKTE VLDDVLNNFS
101: EGYSSLSHEN RRKLLLVLAK EYDLNRTQIR ELIKQYLGLE LPSGEKAQSS GTEEEGSLSA FYRTERNLRH ALKPTYEVLF ERLNTHPGGL KFLSILRADI
201: LCILTEDNIA SLRALDSYLK EKLITWLSPA ALELHHITWD DSASLLEKIV AYEAVHPISS LTDLKRRLGV GRRCFGYLHP AIPGEPLIFI EVALLKNVAQ
301: TIQEVLWNDP PIPECESTCA LFYSISSTQP GLAGINLGKF LIKRVIKLVK RDMPHISTFA TLSPILGFMQ WLLSKLASQS KLAETETRGM AHSSAESFGS
401: TFRENILEPE EERALLDSSV EFTAGASGME VMWNLLTDAD FEWINSARLL SVLKPPLMRL CARYLLQEKK RGKALDSVAN FHLQNGAMVE RLNWMADRSE
501: KGLLQSGGIM VNYVYRLDDI EEYAQSYFSS GHIHTSSDLC CYVEPLKENE TTKD

Best Arabidopsis Sequence Match ( AT4G04320.1 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL
101: LVLAKEYDVN REQVRELVKQ YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENTPS LRTLDSFLKE
201: KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS VPGEPLIFIE VALMETVAQT IQEVLWDNPP IPENQATCAL
301: FYSISSTQPG LAGINLGKFL IKRVITLVKK DMPHVSTFAT LSPIPGFMQW LLSKLSSQSR FAEDERGTQS NSPSSTFSEK VLLPEEEHAL MTLSDESSSG
401: SNGMEVLLNL LSVKNCDWAT SPRLLPVLEP ILMRLCARYL LQEKKRGKAL DSVANFHLQN GAMVERINWM ADRSEKGIRQ SGGIMVNYVY RLENIEDYAQ
501: SYFGSGKIHA SPGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.