Factsheet for PGSC0003DMT400055273

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

nucleus 2
plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	PGSC0003DMT400058821	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036310.2.1	Tomato	mitochondrion	26.5	79.49
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	39.03	58.8
KRH11486	Soybean	mitochondrion	60.97	39.85
KRH36502	Soybean	mitochondrion	60.97	39.7
VIT_10s0116g00870.t01	Wine grape	mitochondrion	62.39	39.53
AT4G04320.1	Thale cress	mitochondrion	55.56	37.64
CDY21296	Canola	mitochondrion	55.84	37.05
CDX90855	Canola	mitochondrion	55.56	36.86
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	48.15	32.88
TraesCS5D01G208800.1	Wheat	mitochondrion	46.72	32.22
TraesCS5B01G201000.1	Wheat	mitochondrion	46.72	32.22
TraesCS5A01G202500.1	Wheat	mitochondrion	46.72	32.22
Zm00001d005711_P005	Maize	mitochondrion	47.01	32.04
OQU89456	Sorghum	mitochondrion, plastid	47.29	31.98
Solyc02g036300.2.1	Tomato	mitochondrion	9.4	31.43
HORVU5Hr1G060110.16	Barley	plastid	47.58	29.82
Bra000788.1-P	Field mustard	mitochondrion	55.84	20.98
CDX94547	Canola	cytosol, mitochondrion, nucleus	9.69	17.89
GSMUA_AchrUn_...	Banana	mitochondrion	3.13	4.01
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	0.28	0.96
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	0.28	0.48

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	Gene3D:3.40.630.150	MapMan:5.1.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0050080	InterPro:IPR038351	UniProt:M1BXP8	InterPro:MCD_N	InterPro:MCD_N_sf
InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	PFAM:PF05292	PFAM:PF17408	EnsemblPlantsGene:PGSC0003DMG401021462	PGSC:PGSC0003DMG401021462
EnsemblPlants:PGSC0003DMT400055273	PANTHER:PTHR28641	SignalP:SignalP-noTM	UniParc:UPI000294B941	:	:

Description

Malonyl-CoA decarboxylase [Source:PGSC_GENE;Acc:PGSC0003DMG401021462]

Coordinates

chr2:-:17680179..17683032

Molecular Weight (calculated)

39811.1 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.178

Length

351 amino acids

Sequence
(BLAST)

001: MTWDVAVLVL PGISSCLMAA AKSKSWKRQF DLYMYVTSAV MNKKGLAILM RTKMRPLSPT FASSKSKLNQ MQTSQLEGDK VSSQDASLLP EREFSQVRES
101: MHSAMSTNKT EIVDIALDEF SEGYFFLSPE NRYKMLLSLA KEYDLNRTRV RELMKQHLDL QLPSDKAEDS GHEEEGSLSA FYRIERNLRQ ALKPMYEVLF
201: ERLNTHPGGL KFLSDIRADI LCLLGDVNIA SLRALDSHLK EKLITWLSPA NLELHNITWD DPASLLEKIV AYEAVHPISN LIDLKRRLGI GRRCFGYFHP
301: AIPGEPLIFI EVALMKDVAA TIQEVLWDNP PISEHEASCA IFYSISSTQV H

Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.