CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH11287
KRH16140
KRH20991
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	KRH02173	AT4G15560.1	24104567
AT4G04320.1	KRH11287	AT4G15560.1	24104567
AT4G04320.1	KRH16140	AT4G15560.1	24104567
AT4G04320.1	KRH20991	AT4G15560.1	24104567
AT4G04320.1	KRH50940	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11486	Soybean	mitochondrion	92.76	93.11
VIT_10s0116g00870.t01	Wine grape	mitochondrion	73.65	71.66
AT4G04320.1	Thale cress	mitochondrion	65.86	68.53
CDY21296	Canola	mitochondrion	65.31	66.54
CDX90855	Canola	mitochondrion	65.12	66.35
PGSC0003DMT400055273	Potato	plastid, vacuole	39.7	60.97
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	26.35	60.94
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	11.69	60.58
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	22.82	58.85
Solyc02g036300.2.1	Tomato	mitochondrion	11.32	58.1
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	54.36	57.0
TraesCS5B01G201000.1	Wheat	mitochondrion	53.43	56.58
TraesCS5A01G202500.1	Wheat	mitochondrion	53.06	56.19
Zm00001d005711_P005	Maize	mitochondrion	53.62	56.12
OQU89456	Sorghum	mitochondrion, plastid	53.99	56.07
TraesCS5D01G208800.1	Wheat	mitochondrion	52.88	55.99
Solyc02g036310.2.1	Tomato	mitochondrion	11.5	52.99
HORVU5Hr1G060110.16	Barley	plastid	53.8	51.79
GSMUA_AchrUn_...	Banana	mitochondrion	25.42	50.0
Bra000788.1-P	Field mustard	mitochondrion	63.82	36.83

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	EntrezGene:100807487	Gene3D:3.40.630.150	MapMan:5.1.2.4
EMBL:ACUP02005377	EnsemblPlantsGene:GLYMA_09G007100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050080	UniProt:I1KZV8
InterPro:IPR038351	EnsemblPlants:KRH36502	ProteinID:KRH36502	ProteinID:KRH36502.1	InterPro:MCD_N	InterPro:MCD_N_sf
InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C	PFAM:PF05292	PFAM:PF17408	PANTHER:PTHR28641	UniParc:UPI00023CB153
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:502352..509911

Molecular Weight (calculated)

60512.6 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.271

Length

539 amino acids

Sequence
(BLAST)

001: MNKKALSILM RARMKPNDRT NLSLSPIPLT NARSQMQQQQ QNSLPNGSPG DGNSAPNDSG NSDREFKSVR ASMHSAISMN KTEVLDDVLN NFSEGYLSLS
101: RENRRKLLLV LAREYDLNRS QVRELIKQYL GLELPADKAQ VSGSEDEGLF SSFYRVERNL RHALQPVYEV LFERLNTHPG GLRTLSILRE DILSILTEEN
201: IASLRALDSY LMEKFITWLS PAALELHQIT WDDPASLLEK IVAYEAVHPI SNLLDLKRRL GIGRRCFGYL HPAIPGEPLI FIEVALLKDV AQTIQEVLWD
301: SPPIPEGEAT CALFYSISST QPGLAGINLG KFLIKRVVTQ VKREMPHIST FATLSPIPGF MSWLLSKLAS QRLLAEGDNL SQPQAEGSSS TFYENILKPK
401: EEEALMSLPK DIATGENGMD VMFNLLTSTS YKWIHSPELL SALKSPLMRL CARYLLQEKK RGKALDSVAN FHLQNGAMVE RINWMADRSD KGLSQSGGIM
501: VNYVYRLDHI EEYAHSYFSN AEIHASSALH HWVDVTDTA

Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.