Factsheet for Bra000788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012779.1-P
Bra033495.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	Bra012779.1-P	AT4G15560.1	24104567
AT4G04320.1	Bra033495.1-P	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90855	Canola	mitochondrion	53.21	93.95
CDY21296	Canola	mitochondrion	52.14	92.06
AT4G04320.1	Thale cress	mitochondrion	47.64	85.91
KRH36502	Soybean	mitochondrion	36.83	63.82
KRH11486	Soybean	mitochondrion	36.51	63.5
VIT_10s0116g00870.t01	Wine grape	mitochondrion	36.72	61.91
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	14.99	60.09
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	6.64	59.62
PGSC0003DMT400055273	Potato	plastid, vacuole	20.98	55.84
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	12.42	55.5
Solyc02g036300.2.1	Tomato	mitochondrion	6.21	55.24
TraesCS5B01G201000.1	Wheat	mitochondrion	29.02	53.24
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	29.23	53.11
OQU89456	Sorghum	mitochondrion, plastid	29.44	52.99
TraesCS5A01G202500.1	Wheat	mitochondrion	28.8	52.85
TraesCS5D01G208800.1	Wheat	mitochondrion	28.69	52.65
Zm00001d005711_P005	Maize	mitochondrion	28.91	52.43
HORVU5Hr1G060110.16	Barley	plastid	29.23	48.75
GSMUA_AchrUn_...	Banana	mitochondrion	12.96	44.16
Solyc02g036310.2.1	Tomato	mitochondrion	5.35	42.73

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	MapMan:16.4.5.1.3	Gene3D:2.130.10.10	Gene3D:3.40.630.150
MapMan:5.1.2.4	EnsemblPlantsGene:Bra000788	EnsemblPlants:Bra000788.1	EnsemblPlants:Bra000788.1-P	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050080	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:IPR038351	UniProt:M4C9A9	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC_C
PFAM:PF00400	PFAM:PF05292	PFAM:PF17408	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253FD04	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT4G04320 (E=5e-183) | malonyl-CoA decarboxylase family protein

Coordinates

chrA03:+:13109043..13118335

Molecular Weight (calculated)

104445.0 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.248

Length

934 amino acids

Sequence
(BLAST)

001: MSKKNLAILL RARMRSSNHS AKSSLSQFTK EIPSNPQENH SGDHIVRNSS ELDTIGRVYD VVRETMHSAI SATKTGGSDI TLNDFEEGYF SLSLEDRGKL
101: LLALAKEYDV NREQVRELIK QYLGLETPLA SDDDAELHSS PKKEASSSVF YRVEWSLRHA LKPTYETFFE RLNTHPGGLR FLSILRADLL SILTKDNMPS
201: LRALDSYLKE KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS IPGEPLIFIE VALMETVAQT IQEVLWDNPP
301: IPENQATCAL FYSISSTQPG LAGINLGKFL IKRVITLVKK EMPHVSTFAT LSPIPGYMQW LLSKLSSQSR FAEEERDGTQ SNPSSSTFSE KVLLPEEEQA
401: LMSLSDDSSS GSNGMEVLLN LLSAKNCDWA TSPRILPVLE PILMRLCARY LLQEKKRGKA LDSVANFHLQ NGAMVERINW MADRSEKGIH QSGGIMVNYV
501: YSLILATVCV LARIQRPLRK IWWLLIFPIN KLLREAAAIK RIFVTEFSSG FTPWKNYRVI QGHLGWVRSV AFEPSNEWFC TGSADGTIKV WDVASGVLKL
601: TLTGHIGQVR GLAVSNKDTS YMFSAGDDKQ VKCWDLEQNK VIRSYHGHLS GVYCLALHPT LDVLLTGGRD SVCRVWDIRT KTQSFALSGH DKDVCSVFTP
701: PTHPPQVVTG SHDSTIKFWD LRYGRTMTTL TNHKKAVRAT ALHPTKNASV SASADNIKKF SLNPKGEFRH NMLSQQRATI NAVAVNEDGV MVTGGDNGSL
801: WFWDWKSGHS FQQAQAIVQP GSLENEAGIY AACYDQTGSR LNYPDPAQLD FGSISRMQQA EGYTDRFMFL AVSPEGKTNA NGAGDETFRF WNVFRSMKAQ
901: ALVQRTRHGS IGLSIFSFKT FPPSISELGR VLNM

Best Arabidopsis Sequence Match ( AT4G04320.1 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL
101: LVLAKEYDVN REQVRELVKQ YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENTPS LRTLDSFLKE
201: KLGMWLSPAT LELHQITWDD PASLLEKIVA YEAVHPISNL LDLKRRLGIG RRCFGYFHPS VPGEPLIFIE VALMETVAQT IQEVLWDNPP IPENQATCAL
301: FYSISSTQPG LAGINLGKFL IKRVITLVKK DMPHVSTFAT LSPIPGFMQW LLSKLSSQSR FAEDERGTQS NSPSSTFSEK VLLPEEEHAL MTLSDESSSG
401: SNGMEVLLNL LSVKNCDWAT SPRLLPVLEP ILMRLCARYL LQEKKRGKAL DSVANFHLQN GAMVERINWM ADRSEKGIRQ SGGIMVNYVY RLENIEDYAQ
501: SYFGSGKIHA SPGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.