Factsheet for TraesCS5D01G208800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G255800.1
TraesCS1B01G266500.1
TraesCS1D01G255100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	TraesCS1A01G255800.1	AT4G15560.1	24104567
AT4G04320.1	TraesCS1B01G266500.1	AT4G15560.1	24104567
AT4G04320.1	TraesCS1D01G255100.1	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G202500.1	Wheat	mitochondrion	97.64	97.64
TraesCS5B01G201000.1	Wheat	mitochondrion	96.07	96.07
HORVU5Hr1G060110.16	Barley	plastid	95.28	86.61
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	81.14	80.35
Zm00001d005711_P005	Maize	mitochondrion	80.16	79.22
OQU89456	Sorghum	mitochondrion, plastid	79.37	77.84
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	28.09	61.37
Solyc02g036300.2.1	Tomato	mitochondrion	11.98	58.1
AT4G04320.1	Thale cress	mitochondrion	55.01	54.05
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	22.0	53.59
KRH11486	Soybean	mitochondrion	55.99	53.07
CDY21296	Canola	mitochondrion	55.01	52.93
KRH36502	Soybean	mitochondrion	55.99	52.88
CDX90855	Canola	mitochondrion	54.81	52.74
VIT_10s0116g00870.t01	Wine grape	mitochondrion	57.37	52.71
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	10.22	50.0
CDX94547	Canola	cytosol, mitochondrion, nucleus	18.07	48.42
PGSC0003DMT400055273	Potato	plastid, vacuole	32.22	46.72
Bra000788.1-P	Field mustard	mitochondrion	52.65	28.69
Solyc02g036310.2.1	Tomato	mitochondrion	6.29	27.35

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	Gene3D:3.40.630.150	MapMan:5.1.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0050080	InterPro:IPR038351	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC	InterPro:Malonyl_CoA_deC_C
PFAM:PF05292	PFAM:PF17408	PANTHER:PTHR28641	EnsemblPlantsGene:TraesCS5D01G208800	EnsemblPlants:TraesCS5D01G208800.1	SEG:seg

Description

No Description!

Coordinates

chr5D:-:315377011..315380893

Molecular Weight (calculated)

55838.7 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.138

Length

509 amino acids

Sequence
(BLAST)

001: MTRSHTPKSL AVLLRARMHP DSIPSPPPAP SPPASPEPDP SARPAAASSV RHWLHASIGA ASPPPAALEC FSDGYRSLDR GGRHEILRSL ATDYDVPRAR
101: VRDLMRQYVS VSATGEGGGE QPGAEREEGG AASALYRMER GLRDALRPKY AGFLEAMNAQ PGGLKLLAVI RADLLALLGE ENAPVLRALD GYLKEKLVTW
201: LSPAALALHQ ITWDDPASLL EKIVAYEAVH PIRNLIDLKR RLGVGRRCFG YFHPAIPGEP LIFIEVALLK DMATSIQEVL LDVPPIAECE AKCALFYSIS
301: STQPGLSGIN LGKFLLKRVI DMLRKDMPSV QIFATLSPIP GFMQWLLAKL ASQIKLAETE MQEGNLIEGA SSTFRESILF PEEEKMIHSA IDQINGKQGI
401: ELLQDILKSS QWVKSDKLSA ALKSPLMRLC TRYLTREKIR GKALDAVANF HLQNGAMVER LNWMADQSEK GIEQSGGIMV NYLYRLENIE EYASSYSATG
501: IIRTSPSLS

Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.