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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 8
  • golgi 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g067890.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G04320.1 Solyc01g067890.2.1 AT4G15560.1 24104567
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055277 Potato cytosol, mitochondrion, nucleus 39.05 19.62
GSMUA_AchrUn_... Banana extracellular, mitochondrion, plastid 27.62 12.45
GSMUA_AchrUn_... Banana mitochondrion 31.43 12.04
TraesCS5D01G208800.1 Wheat mitochondrion 58.1 11.98
TraesCS5B01G201000.1 Wheat mitochondrion 58.1 11.98
TraesCS5A01G202500.1 Wheat mitochondrion 58.1 11.98
OQU89456 Sorghum mitochondrion, plastid 59.05 11.95
Os09t0394100-01 Rice endoplasmic reticulum, mitochondrion 57.14 11.67
Zm00001d005711_P005 Maize mitochondrion 57.14 11.65
AT4G04320.1 Thale cress mitochondrion 56.19 11.39
KRH36502 Soybean mitochondrion 58.1 11.32
KRH11486 Soybean mitochondrion 57.14 11.17
VIT_10s0116g00870.t01 Wine grape mitochondrion 58.1 11.01
CDY21296 Canola mitochondrion 55.24 10.96
CDX90855 Canola mitochondrion 55.24 10.96
HORVU5Hr1G060110.16 Barley plastid 58.1 10.89
PGSC0003DMT400055273 Potato plastid, vacuole 31.43 9.4
CDX94547 Canola cytosol, mitochondrion, nucleus 12.38 6.84
Bra000788.1-P Field mustard mitochondrion 55.24 6.21
Solyc02g036290.2.1 Tomato cytosol, nucleus, peroxisome, plastid 0.0 0.0
Solyc02g036310.2.1 Tomato mitochondrion 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc02g036300.2.1EnsemblPlantsGene:Solyc02g036300.2Gene3D:3.40.630.150GO:GO:0003674GO:GO:0003824GO:GO:0006629
GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0050080
InterPro:Malonyl_CoA_deCInterPro:Malonyl_CoA_deC_CKEGG:00410+4.1.1.9KEGG:00640+4.1.1.9PANTHER:PTHR28641PFAM:PF05292
UniParc:UPI0002767731UniProt:K4B5S3MapMan:5.1.2.4:::
Description
No Description!
Coordinates
chr2:-:30489290..30491995
Molecular Weight (calculated)
11906.0 Da
IEP (calculated)
10.306
GRAVY (calculated)
0.265
Length
105 amino acids
Sequence
(BLAST)
001: MVLHLCWKKL LRCASNKQSY RSEKRLGIGR RCFEYFYPAI PGESLIFIEV ALVKDVAASI QPGLSGVNLG KFLIKRVVDV VKKDMPNICV FATLSPVTGF
101: RQWML
Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)
001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL
Arabidopsis Description
Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.