CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04320.1	EES19518	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005711_P005	Maize	mitochondrion	89.4	90.1
Os09t0394100-01	Rice	endoplasmic reticulum, mitochondrion	80.35	81.13
TraesCS5B01G201000.1	Wheat	mitochondrion	78.61	80.16
TraesCS5A01G202500.1	Wheat	mitochondrion	77.84	79.37
TraesCS5D01G208800.1	Wheat	mitochondrion	77.84	79.37
HORVU5Hr1G060110.16	Barley	plastid	79.38	73.57
GSMUA_AchrUn_...	Banana	extracellular, mitochondrion, plastid	27.75	61.8
Solyc02g036300.2.1	Tomato	mitochondrion	11.95	59.05
AT4G04320.1	Thale cress	mitochondrion	55.3	55.41
PGSC0003DMT400055277	Potato	cytosol, mitochondrion, nucleus	22.16	55.02
CDY21296	Canola	mitochondrion	55.3	54.25
CDX90855	Canola	mitochondrion	55.11	54.06
KRH11486	Soybean	mitochondrion	55.88	54.0
KRH36502	Soybean	mitochondrion	56.07	53.99
VIT_10s0116g00870.t01	Wine grape	mitochondrion	56.07	52.53
Solyc02g036290.2.1	Tomato	cytosol, nucleus, peroxisome, plastid	10.21	50.96
CDX94547	Canola	cytosol, mitochondrion, nucleus	17.92	48.95
PGSC0003DMT400055273	Potato	plastid, vacuole	31.98	47.29
Bra000788.1-P	Field mustard	mitochondrion	52.99	29.44
Solyc02g036310.2.1	Tomato	mitochondrion	5.97	26.5

Protein Annotations

KEGG:00410+4.1.1.9	KEGG:00640+4.1.1.9	Gene3D:1.20.140.90	Gene3D:3.40.630.150	MapMan:5.1.2.4	UniProt:A0A1W0W534
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0050080	InterPro:IPR038351	InterPro:MCD_N	InterPro:MCD_N_sf	InterPro:Malonyl_CoA_deC
InterPro:Malonyl_CoA_deC_C	EnsemblPlants:OQU89456	ProteinID:OQU89456	ProteinID:OQU89456.1	PFAM:PF05292	PFAM:PF17408
PANTHER:PTHR28641	EnsemblPlantsGene:SORBI_3002G193500	UniParc:UPI0009DC8A8F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:58008878..58012266

Molecular Weight (calculated)

57396.4 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.132

Length

519 amino acids

Sequence
(BLAST)

001: MTRQNISKSL AVLLRARMQP NPIPSPPPPP PTDPDPAAPP VALVRHWLHA SASAASPAPA ALDSFSDGYR SLDLVGRREV LRSLAIDYDV PRARVRDLLR
101: QYMSVASAEP SGGDDVEAEG KEGAASALYR MERGLRDALR PRYAGFLEAM NAQPGGLKLL AVLRADLLAL LGEENAPALR ALDLYLKEKL VTWLSPAALT
201: LHQITWDDPA SLLEKIVAYE AVHPIRNLID LKRRLGIGRR CFGYFHPAIP GEPLIFIEVA LLKDMAASIQ EVLWDDPPTP ESEASCALFY SISSTQPGLS
301: GINLGKFLLK RVIDMLRRDM PSVQIFATLS PIPGFMQWLL AKLASQIKLS EAESQEGNSL GACSTFKESI LLPDEERMIH DATEQADGKQ GIELLQDILK
401: SRQWVKSDKL SAALKRPLMR LCARYLAREK KRGKALDAVA NFHLQNGAMI ERINWMADQS EKGIHQSGGI MVNYLYRLEN IEEYALSYSS TGFIHSSPSL
501: SEYLEVSNIG LCFTPIYFD

Best Arabidopsis Sequence Match ( AT4G04320.2 )
(BLAST)

001: MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV RETMHSAISA SKTGVLDITL NDFQEGYFSL SLEDREKLLL
101: VLAKEYDVNR EQVRELVKQY LGLETPASDD DKGALSSVFY RIERNLRHAL RPTYEVLFER LNTHPGGLRF LSILRADLLS ILSKENTPSL RTLDSFLKEK
201: LGMWLSPATL ELHQITWDDP ASLLEKIVAY EAVHPISNLL DLKRRLGIGR RCFGYFHPSV PGEPLIFIEV ALMETVAQTI QEVLWDNPPI PENQATCALF
301: YSISSTQPGL AGINLGKFLI KRVITLVKKD MPHVSTFATL SPIPGFMQWL LSKLSSQSRF AEDERGTQSN SPSSTFSEKV LLPEEEHALM TLSDESSSGS
401: NGMEVLLNLL SVKNCDWATS PRLLPVLEPI LMRLCARYLL QEKKRGKALD SVANFHLQNG AMVERINWMA DRSEKGIRQS GGIMVNYVYR LENIEDYAQS
501: YFGSGKIHAS PGIHSRL

Arabidopsis Description

Malonyl-CoA decarboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.