CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90993	Soybean	cytosol	95.5	95.35
VIT_03s0180g00020.t01	Wine grape	cytosol	71.22	72.98
PGSC0003DMT400066563	Potato	cytosol, plastid	70.42	71.34
Solyc01g107750.2.1	Tomato	plastid	70.42	70.76
GSMUA_Achr10P...	Banana	cytosol	64.95	68.24
GSMUA_Achr7P21640_001	Banana	cytosol	63.34	67.12
CDX95448	Canola	cytosol	62.54	65.71
AT3G19420.1	Thale cress	cytosol	64.47	65.63
Bra038209.1-P	Field mustard	cytosol	62.06	65.42
CDY46177	Canola	cytosol	62.06	65.42
CDY50153	Canola	cytosol	62.06	65.31
CDY63391	Canola	cytosol	62.06	65.2
Bra022420.1-P	Field mustard	cytosol	61.74	65.2
Bra022421.1-P	Field mustard	cytosol	62.7	64.78
OQU88311	Sorghum	cytosol	64.31	61.73
Os12t0407500-01	Rice	plasma membrane	64.15	60.64
TraesCS5D01G117900.1	Wheat	cytosol	63.02	60.03
TraesCS5B01G115500.1	Wheat	cytosol	62.86	59.79
TraesCS5A01G116100.1	Wheat	cytosol	62.7	59.72
HORVU5Hr1G031300.2	Barley	cytosol	62.7	59.63
KRH77047	Soybean	nucleus, plastid	57.23	58.75
CDY22969	Canola	cytosol, mitochondrion	13.02	58.7
KRH28426	Soybean	cytosol, plastid	56.91	58.32
GSMUA_Achr5P07740_001	Banana	cytosol	52.89	56.24
Os12t0407200-01	Rice	cytosol, extracellular	9.97	55.36
Zm00001d007942_P002	Maize	cytosol	62.86	54.53
CDY65163	Canola	plastid	33.6	52.25
KRH44965	Soybean	cytosol	14.15	21.1

Protein Annotations

EntrezGene:100784003	MapMan:18.4.23.2.1	Gene3D:3.90.190.10	EMBL:ACUP02006703	EnsemblPlantsGene:GLYMA_10G263700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004725	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0019538	GO:GO:0035335	InterPro:IPR014020	InterPro:IPR029021
InterPro:IPR029023	UniProt:K7LLJ2	EnsemblPlants:KRH35761	ProteinID:KRH35761	ProteinID:KRH35761.1	ScanProsite:PS00383
PFscan:PS51181	PFscan:PS51182	PANTHER:PTHR12305	PANTHER:PTHR12305:SF57	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM01326
SUPFAM:SSF52799	InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase	InterPro:Tyr_Pase_AS	UniParc:UPI000233CF5C	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:48795248..48803725

Molecular Weight (calculated)

68849.1 Da

IEP (calculated)

6.215

GRAVY (calculated)

-0.584

Length

622 amino acids

Sequence
(BLAST)

001: MDSVPADVSN SHTINDPSKS PPAKETDRQA SASVASGQDN SPHEASPRLS PTGISSWAKN LKISQPFSGS QDDSSSGNVG KSTFARITSN FGLRLSPKSP
101: VEDDSSSETA GQSNLFGTIT KGLVDSSKNA VKAVQVKARH VVSQNKRRYQ EGGFDLDMTY ITENIIAMGF PAGDMSSGFF GYVEGFYRNH MEEVIKFFET
201: HHKDKYKVYN LCSERLYDAS LFEGKVASFP FDDHNCPPIQ LIISFCQSAY SWLKEDIENV VVVHCKAGMA RTGLMISSLL VFLKFFPTAE ESMDYYNQKR
301: CVDGKGLVLP SQIRYVKYFE RVLTYFNGEN PPARRCMLRG FRLHRCPYWI RPSITVSDHS GVLFSTKKHP RTKDLLPEDF WFGAPKKGVM VFALPGEPGL
401: TELAGDFKIH FHDRQGDFYC WLNTTMTENR KVLNTGDLDG FDKRKLPSPG FMVEVVLVDY NGNVVTSKIE TTTKKSDESS SNNPASPTPV ERSTPAQNAD
501: KESDSHDKDD VFSDGEAEQS ASSRSKQTKA PSQAVEKVKN DTRVSESSRV SNEIANLSHA TEQVSLGNKS STPIRHASEP RTNVEGKTVS SLEVPSTESE
601: FKAMAADASV FTFGDDEDYE SD

Best Arabidopsis Sequence Match ( AT3G19420.1 )
(BLAST)

001: MSSESPNLPA AAGTVPDNHP PPPPVVTAAE AGSDDSPKGV ASKLSAAGIS NWAKNLKVPQ PFASTQNDSG VENTEKSAFA KFTSGLGIRL SPKSPQTNDT
101: TTEGTSSATE SSFIGTITKG LVDTSKNAVK AVQVKARHAV SQNKRRYQEG GFDLDLTYIT ENIIAMGFPA GDMSSGFFGY VEGFYRNQME EVINFLETQH
201: KGKYKVYNLC SERLYDVSLF EGKVASFPFD DHNCPPIHLV TSFCQSAYSW LKEDIENVVV VHCKAGMART GLMICSLLLY LKFFPTAEEC MDFYNQKRCV
301: DGKGLVLPSQ IRYVKYFERI LTYFNGENQP GRRCMLRGFR LHRCPYWIRP SITISDHNGV LFTTKKHPRT KDLSPEDFWF SAPKKGVMVF ALPGEPGLTE
401: LAGDFKIQFH DRQGDFYCWL NTTMMENRVI LKTSELDGFD KRKLPSPGFM VEVVLADINA TIPTNPSSET ASKTPEETSA ANSSPVDGSA SVPGPDKETE
501: NPDKDDVFSD NEGDSTGPTK TTSSASSQTP EAKKSADETA VLTKATEKVS ISGNKGSSQP VQGVTVSKGE ATEKPSGAGV NASSSSESEF KVMAADASVF
601: SFGDEDDFES D

Arabidopsis Description

PTEN2APTEN2A [Source:UniProtKB/TrEMBL;Acc:A0A178V9M6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.