CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12712	Soybean	endoplasmic reticulum	98.44	98.44
KRH02464	Soybean	endoplasmic reticulum, plasma membrane	83.33	90.4
KRH19508	Soybean	plasma membrane	89.58	90.29
CDY63022	Canola	plasma membrane	84.11	86.83
Bra021246.1-P	Field mustard	plasma membrane	84.11	86.83
CDY48700	Canola	plasma membrane	83.59	86.29
CDY43289	Canola	plasma membrane	81.51	85.99
VIT_05s0020g00740.t01	Wine grape	plasma membrane	84.64	84.86
AT3G17430.2	Thale cress	plasma membrane	82.81	84.8
CDX93651	Canola	plasma membrane	81.25	84.55
Bra018714.1-P	Field mustard	plasma membrane	81.25	84.55
Bra014116.1-P	Field mustard	plasma membrane	80.99	84.28
AT1G48230.1	Thale cress	plasma membrane	80.47	84.2
CDY41853	Canola	plasma membrane	80.73	84.01
CDX77330	Canola	plasma membrane	80.73	84.01
CDY66383	Canola	plasma membrane	56.77	83.21
GSMUA_Achr5P22150_001	Banana	plasma membrane	78.65	80.75
GSMUA_Achr6P04900_001	Banana	plasma membrane	77.6	79.89
EER93603	Sorghum	plasma membrane	75.26	76.45
TraesCS4A01G273200.1	Wheat	plasma membrane	76.04	76.04
TraesCS4B01G040800.1	Wheat	plasma membrane	75.78	75.98
Zm00001d033648_P002	Maize	plasma membrane	74.74	75.93
TraesCS4D01G038200.1	Wheat	plasma membrane	75.78	75.78
Os03t0702700-02	Rice	plasma membrane	49.22	75.0
Bra014117.1-P	Field mustard	plasma membrane	52.86	72.76
CDY41850	Canola	plasma membrane	52.6	72.4
KRG96589	Soybean	endoplasmic reticulum, plasma membrane, vacuole	72.14	71.95
HORVU5Hr1G019670.3	Barley	plasma membrane	54.69	71.67
CDX92132	Canola	plasma membrane	54.95	68.06
KRH68321	Soybean	plasma membrane	71.09	60.0
KRH43853	Soybean	plasma membrane	41.67	48.05
KRH13610	Soybean	endoplasmic reticulum, plasma membrane, vacuole	41.41	47.75
Bra022215.1-P	Field mustard	cytosol, extracellular, plasma membrane	46.61	45.2
KRH20279	Soybean	plasma membrane	40.1	44.77
KRH03703	Soybean	plasma membrane	39.84	44.35
KRH52456	Soybean	endoplasmic reticulum	39.32	43.64
KRH61785	Soybean	plasma membrane	39.32	43.64
KRH65971	Soybean	endoplasmic reticulum, extracellular	13.8	42.06
KRH15007	Soybean	endoplasmic reticulum, plasma membrane	23.18	29.09
KRH73122	Soybean	endoplasmic reticulum, plasma membrane	23.18	29.09
KRG97791	Soybean	endoplasmic reticulum, plasma membrane	23.18	28.99
KRH66000	Soybean	endoplasmic reticulum, plasma membrane	22.92	28.21
KRH75798	Soybean	endoplasmic reticulum, extracellular	22.92	28.03
KRG98354	Soybean	endoplasmic reticulum, plasma membrane	21.61	26.95
KRH46459	Soybean	endoplasmic reticulum, plasma membrane	21.61	26.95
KRH18757	Soybean	plasma membrane	23.18	26.02
KRH16322	Soybean	plasma membrane	23.18	26.02
KRH66884	Soybean	peroxisome	22.92	25.29
KRH53233	Soybean	plasma membrane	22.66	25.22
KRH58008	Soybean	mitochondrion, plasma membrane	11.46	25.14
KRG95205	Soybean	peroxisome	22.92	25.14
KRH57328	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	23.18	25.14
KRH04064	Soybean	cytosol, peroxisome, plasma membrane, plastid	22.92	24.79
KRH33048	Soybean	extracellular, plasma membrane	7.55	24.79
KRH64681	Soybean	plasma membrane	22.14	24.64
KRH31077	Soybean	plastid	23.44	22.06
KRG98850	Soybean	cytosol, peroxisome, plasma membrane	19.79	15.23
KRH37964	Soybean	cytosol, peroxisome, plasma membrane	19.01	13.96

Protein Annotations

EMBL:ACUP02005477	EnsemblPlants:KRH37626	EnsemblPlantsGene:GLYMA_09G078700	EntrezGene:100812996	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Sugar_P_trans_dom	PANTHER:PTHR11132	PANTHER:PTHR11132:SF170	PFAM:PF03151	ProteinID:KRH37626
ProteinID:KRH37626.1	TMHMM:TMhelix	UniParc:UPI0001B63A0D	UniProt:A0A0R4J421	MapMan:24.2.1.1.10	:

Description

hypothetical protein

Coordinates

chr9:+:8804416..8810654

Molecular Weight (calculated)

42812.2 Da

IEP (calculated)

8.869

GRAVY (calculated)

0.691

Length

384 amino acids

Sequence
(BLAST)

001: MMINKTLFLT YVYLFIYILL SSGVILYNKW VLSPKYFNFP LPITLTMIHM AFSGAVAFFL VRVFKIVTPV KMTFEIYATC VVPISAFFAS SLWFGNTAYL
101: HISVAFIQML KALMPVATFI MAVLCGIDKA RCDVFLNMLL VSVGVVISSY GEIHFNIVGT VYQVTGIFAE ALRLVLTQVL LQKKGLTLNP ITSLYYIAPC
201: SFVFLFVPWY LLEKPVMEVS QIQFNFWIFF SNAICALALN FSIFLVIGRT GAVTIRVAGV LKDWILIALS TVIFPESTIT GLNIVGYAIA LCGVVMYNYI
301: KVKDVRASQL PVESIPDRIT KDWKFEKKSS DIYVPDNIGD NEGSSGGNGT ASDMKIDEET PLISSSRLSH IGRTQLTNQY ATGK

Best Arabidopsis Sequence Match ( AT3G17430.2 )
(BLAST)

001: MAKMINKTLV LTYIYLLIYI ILSSGVILYN KWVLSPKYFN FPLPITLTMI HMGFAGFVAF LLIRVFKVVA PVKMTFEIYA TCVVPISAFF ASSLWFGNTA
101: YLHISVAFIQ MLKALMPVAT FIMAVVCGTD KPRCDVFSNM LLVSVGVVIS SYGEIHFNIV GTVYQVTGIF AEALRLVLTQ VLLQKKGLTL NPITSLYYIA
201: PCSFVFLALP WYVLEKPTME VSQIQFNFWI FFSNALCALA LNFSIFLVIG RTGAVTIRVA GVLKDWILIA LSTVIFPEST ITGLNITGYA IALCGVVMYN
301: YIKVRDVKAS QPTADSLPDR INKEYKMEKK SSDKFNPNDS VEIPRVGGEV NDEEAPLITS RLSHIGRTQL GNHAA

Arabidopsis Description

UDP-Apiose Transporter 1 (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1W6AJZ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.