CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
extracellular 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58946	Soybean	plastid	91.37	90.88
GSMUA_Achr3P21650_001	Banana	cytosol	26.15	72.93
VIT_07s0005g03800.t01	Wine grape	plastid	54.99	62.58
PGSC0003DMT400036037	Potato	plastid	56.06	59.77
Solyc02g079730.2.1	Tomato	plastid	56.6	57.53
Bra010359.1-P	Field mustard	plastid	49.87	57.1
EES01697	Sorghum	plastid	49.6	56.44
Zm00001d043009_P002	Maize	plastid	49.6	56.27
Os01t0829000-01	Rice	mitochondrion	47.44	55.52
AT4G28590.1	Thale cress	plastid	48.79	54.68
TraesCS3A01G349000.1	Wheat	mitochondrion, plastid	48.25	54.41
TraesCS3B01G381100.1	Wheat	mitochondrion, plastid	47.98	53.94
TraesCS3D01G342900.1	Wheat	mitochondrion, plastid	47.71	53.64
HORVU3Hr1G087940.4	Barley	cytosol, plastid	47.17	47.95
KRG90572	Soybean	plastid	21.02	23.42

Protein Annotations

EMBL:ACUP02004833	EnsemblPlants:KRH42851	EnsemblPlantsGene:GLYMA_08G115500	EntrezGene:100784488	Gene3D:3.40.30.10	InterPro:Thioredoxin-like_sf
ncoils:Coil	PANTHER:PTHR34669	PANTHER:PTHR34669:SF2	ProteinID:KRH42850.1	ProteinID:KRH42851	ProteinID:KRH42851.1
ProteinID:KRH42852.1	SEG:seg	SUPFAM:SSF52833	UniParc:UPI0002338145	UniProt:K7L636	MapMan:35.1

Description

hypothetical protein

Coordinates

chr8:+:8851347..8854531

Molecular Weight (calculated)

42939.0 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.814

Length

371 amino acids

Sequence
(BLAST)

001: MLFLQTTVLT RRFSPFCDAT LHPLSLLNVQ NPMLECAHSF SHYSPVPSNR TVKSISCSVS RKSHSKPEPE PPEPEANSNQ RAGPKARSRS HQPKDVESSN
101: DDKSSAETFP TTIPRKPRRG RRSEAVAVED FVRDSLERTF AAIREQNKDA LESHENIMKE RDGDSSKSES SDKDDDNDDE EEDGGEGVRN KMVIEEESKN
201: WPLDADVGWG IRASEYFEKH PIKNVVGEDG YEIDWEGEID DNWVQEINCL EWESFAFHPS PLIVLVFERY NRASDNWKNL KELEKAVKVF WSAKDRLPPR
301: AVKIDIYIER DLAYALKVRE CPQILFLRGN RVVYREKELR TADELVQMIA FFYYNAKKPA WIDDKALYFR F

Best Arabidopsis Sequence Match ( AT4G28590.1 )
(BLAST)

001: MSFFAVACSA PRSSMLLTGL NSSFSDMHRS PLFVFPVTIS SRSVKRFAAV SSDSVLDPES KNQTRSRRKN KEAVTPIAET ENNEKFPTKV PRKSKRGRRS
101: EADAVEDYVR SSLERTFSTI KEQNPEVFEN KEKANFIKDR GVDEEEEEEE EMVVEEEDPD WPVDTDVGWG IKASEYFDTH PIKNVVGDDG SEIDWEGEID
201: DSWVKEINCL EWESFAFHPS PLVVLVFERY KRASDNWKTL KELEKAIKVY WDAKDRLPPR AVKIDLNIET DLAYALKAKE CPQILFLRGN RILYREKDFR
301: TADELVHMIA HFYYKAKRPS CVDKANVTPY C

Arabidopsis Description

MRL7FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily pr /.../(TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). [Source:TAIR;Acc:AT4G28590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.