Factsheet for Zm00001d043009_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01697	Sorghum	plastid	90.52	90.8
GSMUA_Achr3P21650_001	Banana	cytosol	32.72	80.45
TraesCS3B01G381100.1	Wheat	mitochondrion, plastid	76.76	76.06
TraesCS3D01G342900.1	Wheat	mitochondrion, plastid	76.76	76.06
TraesCS3A01G349000.1	Wheat	mitochondrion, plastid	76.45	75.99
Os01t0829000-01	Rice	mitochondrion	72.78	75.08
HORVU3Hr1G087940.4	Barley	cytosol, plastid	74.92	67.12
Bra010359.1-P	Field mustard	plastid	55.35	55.86
VIT_07s0005g03800.t01	Wine grape	plastid	55.35	55.52
PGSC0003DMT400036037	Potato	plastid	56.57	53.16
AT4G28590.1	Thale cress	plastid	53.52	52.87
Solyc02g079730.2.1	Tomato	plastid	57.19	51.23
KRH58946	Soybean	plastid	56.57	49.6
KRH42851	Soybean	mitochondrion	56.27	49.6
Zm00001d010261_P001	Maize	cytosol	8.56	28.87
Zm00001d010259_P001	Maize	nucleus	16.51	18.31

Protein Annotations

EntrezGene:100282874	Gene3D:3.40.30.10	MapMan:35.1	UniProt:B6TC88	EMBL:EU962603	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0042644	ProteinID:ONM36704.1	PANTHER:PTHR34669	PANTHER:PTHR34669:SF2	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI000182CEE7	EnsemblPlantsGene:Zm00001d043009	EnsemblPlants:Zm00001d043009_P002	EnsemblPlants:Zm00001d043009_T002	SEG:seg	:

Description

Thioredoxin family protein

Coordinates

chr3:-:186342199..186347672

Molecular Weight (calculated)

37137.7 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.736

Length

327 amino acids

Sequence
(BLAST)

001: MLRLPTLTAL KPSTPAISLN RVGCSHGRRR RKLIFVSSAP PPSSSSSRPP KPTSNPEPPK PTHEARNRNP DGSTEAGFPT TKPRKPRRGR RSESAAVEDF
101: VRNRLEQVFA SIQERNPDVL EGKGDILKPK ADVERLPDDE GEGEGGEQKP VVEEEDPSWP LDADVGWGIR ASEYFDKHSI RNVTVDGVEI DWEGDVDEGW
201: VKEINCLEWE SFAFHPSPLV VLVFERYNRA ADNWKFLQEL EKAAKVYWNA KDRLPPRTVK VDINIERDLA YALQARECPQ LLFLRGNKIL YREKEIRTAD
301: ELVQMIAHFY YNAKRPSCVN PEAVASF

Best Arabidopsis Sequence Match ( AT4G28590.1 )
(BLAST)

001: MSFFAVACSA PRSSMLLTGL NSSFSDMHRS PLFVFPVTIS SRSVKRFAAV SSDSVLDPES KNQTRSRRKN KEAVTPIAET ENNEKFPTKV PRKSKRGRRS
101: EADAVEDYVR SSLERTFSTI KEQNPEVFEN KEKANFIKDR GVDEEEEEEE EMVVEEEDPD WPVDTDVGWG IKASEYFDTH PIKNVVGDDG SEIDWEGEID
201: DSWVKEINCL EWESFAFHPS PLVVLVFERY KRASDNWKTL KELEKAIKVY WDAKDRLPPR AVKIDLNIET DLAYALKAKE CPQILFLRGN RILYREKDFR
301: TADELVHMIA HFYYKAKRPS CVDKANVTPY C

Arabidopsis Description

MRL7FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily pr /.../(TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). [Source:TAIR;Acc:AT4G28590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.