CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
golgi 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42851	Soybean	mitochondrion	90.88	91.37
GSMUA_Achr3P21650_001	Banana	cytosol	26.01	72.93
VIT_07s0005g03800.t01	Wine grape	plastid	54.96	62.88
PGSC0003DMT400036037	Potato	plastid	56.3	60.34
Bra010359.1-P	Field mustard	plastid	50.67	58.33
Solyc02g079730.2.1	Tomato	plastid	56.84	58.08
EES01697	Sorghum	plastid	49.6	56.75
Zm00001d043009_P002	Maize	plastid	49.6	56.57
Os01t0829000-01	Rice	mitochondrion	47.99	56.47
AT4G28590.1	Thale cress	plastid	49.6	55.89
TraesCS3A01G349000.1	Wheat	mitochondrion, plastid	47.72	54.1
TraesCS3B01G381100.1	Wheat	mitochondrion, plastid	47.72	53.94
TraesCS3D01G342900.1	Wheat	mitochondrion, plastid	47.45	53.64
HORVU3Hr1G087940.4	Barley	cytosol, plastid	47.45	48.49
KRG90572	Soybean	plastid	20.91	23.42

Protein Annotations

EMBL:ACUP02003294	EnsemblPlants:KRH58946	EnsemblPlantsGene:GLYMA_05G157700	EntrezGene:100805437	Gene3D:3.40.30.10	InterPro:Thioredoxin-like_sf
ncoils:Coil	PANTHER:PTHR34669	PANTHER:PTHR34669:SF2	ProteinID:KRH58946	ProteinID:KRH58946.1	SEG:seg
SUPFAM:SSF52833	UniParc:UPI00023C42A9	UniProt:I1K3Y2	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:34993080..34996685

Molecular Weight (calculated)

43019.3 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.785

Length

373 amino acids

Sequence
(BLAST)

001: MKMLFLQTTF LPRPFSPFCD ASLHPLSSLN IQNPMLECAH SFSHYSPVSS HRIVKSISCS VSSKSHSKPD PEPPEPEASS NQRARPKARS RSGQSKDVVS
101: SNGDKSSAET FPTTIPRKPR RGRRSEAVAV EDFVRGSLER TFAAIREQNK DALENHENIM KERDDDSSKS ESGDKDDDND DEEEDGGEGI RNKMVIEEES
201: KSWPLDADVG WGIRASEYFE QHPIKNVVGE DGYEIDWEGE IDDNWVQEIN CLEWESFAFH PSPLIVLVFE RYNRASDNWK ILKELEKAIK VYWRAKDRLP
301: PRAVKIDINI ERDLAYALKV RECPQILFLR GHRVVYREKE LRTADELVQM IAFFYYNAKK PAWIDDKALY TRY

Best Arabidopsis Sequence Match ( AT4G28590.1 )
(BLAST)

001: MSFFAVACSA PRSSMLLTGL NSSFSDMHRS PLFVFPVTIS SRSVKRFAAV SSDSVLDPES KNQTRSRRKN KEAVTPIAET ENNEKFPTKV PRKSKRGRRS
101: EADAVEDYVR SSLERTFSTI KEQNPEVFEN KEKANFIKDR GVDEEEEEEE EMVVEEEDPD WPVDTDVGWG IKASEYFDTH PIKNVVGDDG SEIDWEGEID
201: DSWVKEINCL EWESFAFHPS PLVVLVFERY KRASDNWKTL KELEKAIKVY WDAKDRLPPR AVKIDLNIET DLAYALKAKE CPQILFLRGN RILYREKDFR
301: TADELVHMIA HFYYKAKRPS CVDKANVTPY C

Arabidopsis Description

MRL7FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily pr /.../(TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). [Source:TAIR;Acc:AT4G28590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.