Factsheet for VIT_07s0005g03800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21650_001	Banana	cytosol	30.67	75.19
Os01t0829000-01	Rice	mitochondrion	56.13	57.73
PGSC0003DMT400036037	Potato	plastid	60.74	56.9
TraesCS3A01G349000.1	Wheat	mitochondrion, plastid	56.75	56.23
TraesCS3B01G381100.1	Wheat	mitochondrion, plastid	56.75	56.06
TraesCS3D01G342900.1	Wheat	mitochondrion, plastid	56.75	56.06
Zm00001d043009_P002	Maize	plastid	55.52	55.35
EES01697	Sorghum	plastid	55.21	55.21
KRH42851	Soybean	mitochondrion	62.58	54.99
KRH58946	Soybean	plastid	62.88	54.96
Bra010359.1-P	Field mustard	plastid	54.29	54.63
AT4G28590.1	Thale cress	plastid	55.21	54.38
Solyc02g079730.2.1	Tomato	plastid	60.43	53.97
HORVU3Hr1G087940.4	Barley	cytosol, plastid	56.13	50.14
VIT_05s0094g01460.t01	Wine grape	plastid	25.15	25.0

Protein Annotations

EntrezGene:100265208	wikigene:100265208	MapMan:35.1	ProteinID:CCB60139	ProteinID:CCB60139.1	UniProt:F6HZM4
EMBL:FN596502	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	EntrezGene:LOC100265208	wikigene:LOC100265208	PANTHER:PTHR34669
PANTHER:PTHR34669:SF2	UniParc:UPI00015CA949	ArrayExpress:VIT_07s0005g03800	EnsemblPlantsGene:VIT_07s0005g03800	EnsemblPlants:VIT_07s0005g03800.t01	unigene:Vvi.23387
RefSeq:XP_002272044	RefSeq:XP_002272044.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:6777244..6780237

Molecular Weight (calculated)

37564.0 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.802

Length

326 amino acids

Sequence
(BLAST)

001: MLPIQTTLLP KSFSPLFHSK LVFSSTLHSP KPPSRVVVSA RSDPKPDPKP RPEPGSKPKR RTKAPRNDGD EANPNRTFPA TIPRKPRRGR RSEAVAVEDF
101: VRDTLDRTFA AIREQNSETP EIMKKRLDDD DDDDEDDEED EDNGGDKVVV EEESSNWPLD AEVGWGIRAS EYFEQHPIKN VVGEDGVEID WEGELETGWV
201: KEINCLEWES FAFHPSPLIV LVFERYNRAS DNWKVLKELE KAAKVYWSAK DRLPPRTVKI DINIERDMAY ALQAKECPQI LFLRGNRILY REKDFRTADE
301: LVHMIAYFYY NAKKPSCISD SALFSR

Best Arabidopsis Sequence Match ( AT4G28590.1 )
(BLAST)

001: MSFFAVACSA PRSSMLLTGL NSSFSDMHRS PLFVFPVTIS SRSVKRFAAV SSDSVLDPES KNQTRSRRKN KEAVTPIAET ENNEKFPTKV PRKSKRGRRS
101: EADAVEDYVR SSLERTFSTI KEQNPEVFEN KEKANFIKDR GVDEEEEEEE EMVVEEEDPD WPVDTDVGWG IKASEYFDTH PIKNVVGDDG SEIDWEGEID
201: DSWVKEINCL EWESFAFHPS PLVVLVFERY KRASDNWKTL KELEKAIKVY WDAKDRLPPR AVKIDLNIET DLAYALKAKE CPQILFLRGN RILYREKDFR
301: TADELVHMIA HFYYKAKRPS CVDKANVTPY C

Arabidopsis Description

MRL7FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily pr /.../(TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). [Source:TAIR;Acc:AT4G28590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.