CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

nucleus 1
vacuole 8
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63848	Soybean	nucleus	94.89	95.1
KRH41079	Soybean	vacuole	85.32	84.6
KRH00258	Soybean	vacuole	16.38	81.91
KRH63258	Soybean	mitochondrion	23.83	81.16
VIT_17s0000g00370.t01	Wine grape	vacuole	75.53	76.84
PGSC0003DMT400036974	Potato	extracellular, vacuole	73.19	75.6
Solyc03g118370.2.1	Tomato	extracellular	72.77	75.16
PGSC0003DMT400074071	Potato	vacuole	72.34	74.56
GSMUA_Achr9P01080_001	Banana	extracellular, vacuole	72.55	73.02
KRH01514	Soybean	vacuole	71.49	72.89
GSMUA_Achr6P11030_001	Banana	vacuole	72.13	72.59
KRH45206	Soybean	plasma membrane	71.06	72.45
GSMUA_Achr10P...	Banana	vacuole	68.3	69.78
Os11t0522900-01	Rice	vacuole	68.51	68.22
TraesCS2D01G285600.2	Wheat	vacuole	67.87	68.16
TraesCS2B01G304000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	67.87	68.16
TraesCS2A01G287100.1	Wheat	vacuole	67.87	68.16
Os04t0396800-01	Rice	vacuole	67.87	67.87
TraesCS6D01G165200.2	Wheat	vacuole	67.23	67.52
TraesCS6B01G205500.1	Wheat	vacuole	67.23	67.23
TraesCS6A01G179800.2	Wheat	vacuole	66.6	66.88
EES10676	Sorghum	extracellular	67.02	66.46
OQU83511	Sorghum	extracellular, plastid, vacuole	66.6	65.07
Zm00001d049276_P003	Maize	mitochondrion, vacuole	66.6	64.94
KRH33130	Soybean	nucleus	62.13	62.93
KRH66743	Soybean	extracellular	60.85	62.31
Zm00001d007372_P002	Maize	vacuole	65.74	62.05
KRG95071	Soybean	vacuole	60.85	61.9
KRH66741	Soybean	extracellular, vacuole	59.79	60.82
KRG95073	Soybean	extracellular, vacuole	58.94	60.22
Zm00001d003895_P001	Maize	vacuole	67.02	60.11
KRH66744	Soybean	vacuole	58.94	60.09
KRH30802	Soybean	vacuole	21.49	55.49
KRH66738	Soybean	nucleus	53.83	52.6
KRG95070	Soybean	vacuole	40.43	50.8
KRH53391	Soybean	extracellular, vacuole	44.04	43.76
KRH44745	Soybean	cytosol, nucleus, vacuole	10.21	43.64
KRH64547	Soybean	extracellular, vacuole	43.83	43.55
KRH15957	Soybean	nucleus	44.26	42.71
KRG98789	Soybean	cytosol, mitochondrion	10.85	38.06
KRH30255	Soybean	peroxisome	16.38	35.32
HORVU5Hr1G069460.1	Barley	vacuole	10.64	33.33
KRH02406	Soybean	cytosol	21.49	29.19

Protein Annotations

EntrezGene:100790287	MapMan:19.4.2.2	Gene3D:3.40.50.12670	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02003495
EnsemblPlantsGene:GLYMA_06G165400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004180	GO:GO:0004185	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	UniProt:I1KBY4	InterPro:IPR029058	EnsemblPlants:KRH54117	ProteinID:KRH54117
ProteinID:KRH54117.1	PFAM:PF00450	PRINTS:PR00724	ScanProsite:PS00131	ScanProsite:PS00560	PANTHER:PTHR11802
PANTHER:PTHR11802:SF123	InterPro:Peptidase_S10	SUPFAM:SSF53474	InterPro:Ser_caboxypep_his_AS	InterPro:Ser_caboxypep_ser_AS	SignalP:SignalP-noTM
UniParc:UPI00023C30AB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:13723251..13726872

Molecular Weight (calculated)

52773.9 Da

IEP (calculated)

7.174

GRAVY (calculated)

-0.156

Length

470 amino acids

Sequence
(BLAST)

001: MKWPTWKSKS NTTMALAAVL LHLSFSLEVF CLPSHADTIA LLPGQPHVSF QQFSGYVTVD DKKHKSLFYY FAEAETDPSS KPLVLWLNGG PGCSSLGVGA
101: FSENGPFRPN EEFLIKNDYS WNKEANMLYL ETPVGVGFSY AKGSSSYMTV NDEATARDNL VFLLRWFNKF PQYKSRDLFL TGESYAGHYV PQLAKLMVEM
201: NTKNKIFNLK GIALGNPVLE YATDFNSRAE FFWSHGLISD STYNMFTRVC NYSRYVSEYY RDSVSPLCSK VMSQVSRETS KFVDKYDVTL DVCISSVLSQ
301: SKVICPQSQE ANESIDVCVD DKVTNYLNRR DVQEALHAKL VGVRKWEVCS NILDYDMLNL EVPTLLVVGS LIKAGVKVLI YSGDQDSVIP LTGSRTLVQK
401: LARKLGLNST VPYRVWFEGQ QVGGWTQGYG NILSFATVRG ASHEAPFSQP ERSLVLFKSF LEGRPLPDAF

Best Arabidopsis Sequence Match ( AT1G28110.1 )
(BLAST)

001: MSPLQWLTIS FALIIFHSLT VSSSVLSHSD RVTRLPGQPR VGFQQYSGYV TVDDKKQRAL FYYFAEAETN PSSKPLVLWL NGGPGCSSLG VGAFSENGPF
101: RPKGPILVKN QHSWNQEANM LYLETPVGVG FSYSTQSSHY EGVNDKITAR DNLVFLQRWF LKFPHYLNRS LFITGESYAG HYVPQLAELM IQYNKKHHLF
201: NLRGIAIGNP VLEFATDFNS RAEYFWSHGL ISDSTYKMFT SYCNYSRYVS EYYRGSMSSM CSKVMSQVST ETSRFVDKYD VTLDVCIPSV LSQSKVVSPN
301: QVGESVDVCV EDETVNYLNR RDVQEALHAR LIGVREWTVC SNVLDYQLLD VEIPTINIVG SLVKAGVPVL VYSGDQDSVI PLTGSRTLVS RLAKQLGLRT
401: SVPYRVWFAG QQVGGWTQVY GNVLSFATVR GASHEVPFSQ PERSLVLFKA FLDGHPLPEE F

Arabidopsis Description

SCPL45Serine carboxypeptidase-like 45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y09]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.