CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02720
KRH19149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61290.1	KRH02720	AT2G19560.1	19843313
AT5G61290.1	KRH19149	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56869	Soybean	cytosol	82.43	66.16
KRH56870	Soybean	cytosol, nucleus, peroxisome	79.19	64.11
KRH54615	Soybean	cytosol	53.78	63.17
KRH63273	Soybean	cytosol, peroxisome, plastid	70.81	57.08
CDY02158	Canola	cytosol	58.65	54.11
CDY23072	Canola	cytosol	58.65	54.11
Solyc03g115560.2.1	Tomato	cytosol, peroxisome, plastid	66.49	54.07
PGSC0003DMT400063125	Potato	cytosol, peroxisome, plastid	66.22	53.85
VIT_17s0000g06790.t01	Wine grape	cytosol, peroxisome, plastid	64.05	52.2
Bra012970.1-P	Field mustard	cytosol	61.08	50.56
AT5G61290.1	Thale cress	cytosol	62.43	50.11
Bra012971.1-P	Field mustard	cytosol	61.62	49.57
CDY02157	Canola	cytosol	61.62	49.35
CDX99030	Canola	cytosol, mitochondrion, peroxisome, plastid	60.27	49.23
CDY23071	Canola	cytosol	61.35	49.13
CDX69991	Canola	cytosol, mitochondrion, peroxisome, plastid	59.73	48.79
CDY14028	Canola	cytosol, mitochondrion, peroxisome, plastid	59.73	48.15
Bra028683.1-P	Field mustard	mitochondrion	59.73	48.15
AT5G07800.1	Thale cress	cytosol	59.73	48.04
Bra009308.1-P	Field mustard	cytosol, mitochondrion, peroxisome	59.73	47.94
CDY40773	Canola	mitochondrion	59.19	47.71
KRH55196	Soybean	cytosol, mitochondrion, peroxisome	11.08	35.96
KRH28040	Soybean	peroxisome, plastid	42.43	34.35
KRH30009	Soybean	endoplasmic reticulum, mitochondrion	41.08	34.31
KRH20786	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.27	33.94
VIT_17s0000g06780.t01	Wine grape	cytosol, peroxisome, plastid	63.51	22.05

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	EMBL:ACUP02002798	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like
EnsemblPlantsGene:GLYMA_05G023600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0004499
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660	GO:GO:0050661
GO:GO:0055114	InterPro:IPR036188	UniProt:K7KMH1	EnsemblPlants:KRH56868	ProteinID:KRH56868	ProteinID:KRH56868.1
PFAM:PF00743	PFAM:PF13450	PIRSF:PIRSF000332	PRINTS:PR00419	PANTHER:PTHR23023	PANTHER:PTHR23023:SF86
SUPFAM:SSF51971	UniParc:UPI000295CD6A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2049641..2053465

Molecular Weight (calculated)

41957.5 Da

IEP (calculated)

6.192

GRAVY (calculated)

-0.298

Length

370 amino acids

Sequence
(BLAST)

001: MTNQSKNVCV IGSGPSGLVA ARELKREGHK VVVLEQNHDI GGQWLYDPNM IKFNTKVLYV GPLNYGVPSE DLKWVVRSKE KKREEVEQVF DAVVVATGHH
101: SKPRFPCMQG MDTWRRKQMH SHIYRSPEPF RGEIVVVVGN SYSGQEISME LVKAAKELHK IWYTVNIDTL EEDGSAIFMD GSIIIADTIL YCTGYNYSFP
201: FLDTKGMVVV DDNRVGPLYE HTLPPLLAPP LSFIGIPKKI LGLPFFESQG KWIAQLLSGK KALPSCEEMM KSIEEFYHSK EVVGIPKRFT HEIGAIGFEY
301: CDKSAKYVGL PKLQEWRKEL CILSLVNSCV NLETYRDSWN DDEKLQEALQ SPYFTQLGVE LEDPSLQNSN

Best Arabidopsis Sequence Match ( AT1G62600.1 )
(BLAST)

001: MAPSLSPIRS HHVAVIGAGA AGLVAARELR REGHSVVVFE RQKQVGGTWI YTDHIEPDPL SVDPTRSVVH SSVYGSLRTN LPRECMGYRD FPFVIRSDVS
101: ESRDPRRFPS HGEVLAYLQD FAKEFAIEEM IRFDTAVVKV APAAEEGSGK WRIESTEKEK KVLRDEIYDA VVVCNGHYIE PRHAEIPGIS SWPGKEMHSH
201: NYRIPEPFRD QVVVLIGNSA SADDISRDIA RVAKEVHVAC RSNAADTYIE RPGYSNLWMH SMIESVHEDG SVVFQNGKTI SVDVIMHCTG YKYHFPFLET
301: NGNVTVDDNR VGPLYKDVFS PAFAPWLSFV GIPWKVVPFP MFELQSKWIA GVLSGRIPLP SKEDMMMEIK TLYSTLDAQG IAKRYTHQMG ISQFEYNSWL
401: ASQCGCSETE EWRKEMYFAT GVKKRAHPET YRDEWDDHHL VSQAYQDFSL YT

Arabidopsis Description

Flavin-containing monooxygenase FMO GS-OX-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.