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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane, mitochondrion

Predictor Summary:
  • nucleus 1
  • extracellular 3
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 3
  • vacuole 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, mitochondrion, plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d009801_P001 Maize plasma membrane 78.76 84.81
EES02381 Sorghum golgi, plasma membrane, vacuole 51.19 50.95
TraesCS1B01G134800.1 Wheat plasma membrane 47.54 48.78
TraesCS1A01G114900.1 Wheat plasma membrane, vacuole 47.39 48.54
TraesCS1D01G116300.1 Wheat plasma membrane 47.23 48.3
EES05592 Sorghum plasma membrane 47.07 47.44
EER88222 Sorghum plasma membrane 46.28 46.42
EES07030 Sorghum plasma membrane 42.79 43.13
OQU91137 Sorghum plasma membrane 32.33 42.86
EES06565 Sorghum plasma membrane 42.31 42.58
EES12285 Sorghum plasma membrane 41.84 42.44
HORVU1Hr1G025280.2 Barley mitochondrion, plasma membrane, plastid, vacuole 48.18 42.4
KXG24562 Sorghum plasma membrane 42.16 42.16
KXG25244 Sorghum plastid 45.48 38.94
EES04934 Sorghum plasma membrane 38.03 38.52
EES10085 Sorghum plasma membrane 37.4 38.13
EER95121 Sorghum plasma membrane 29.95 31.87
EES02154 Sorghum golgi, plasma membrane 18.07 31.32
EES17498 Sorghum plasma membrane 28.21 28.43
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10UniProt:A0A1B6P6U6GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740
GO:GO:0019538InterPro:IPR000719InterPro:IPR001611InterPro:IPR032675EnsemblPlants:KXG21439ProteinID:KXG21439
ProteinID:KXG21439.1InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptPFAM:PF00069
PFAM:PF08263PFAM:PF13855ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001
PANTHER:PTHR27001:SF49InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3009G062300SUPFAM:SSF52058
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASTMHMM:TMhelixUniParc:UPI00081AD858SEG:seg:
Description
hypothetical protein
Coordinates
chr9:-:6604415..6615271
Molecular Weight (calculated)
70000.7 Da
IEP (calculated)
7.220
GRAVY (calculated)
-0.141
Length
631 amino acids
Sequence
(BLAST)
001: MGGRGAPEAT RRRLVVAVVG VVVAAAAVLC PTAAGKLGKQ AKALVAIKAA LHDPGNVLWD WDLKFGNDPC RWSMVTCQKG QIQELSMTNK NLSGTLSPAV
101: GKLRTLRYLL LSHNALSGRI PDTVGRMKLL EVLDLSNNHF SGSIPSTLVH LANLQYLKLN NNSLSGPIPE SLATDAPMLF SLDVSFNNLS GHRPTFRIWN
201: VFFEGNPFLS DIGSESIAPP VGPKDGKEED SQGMSKNIFI LLLCIGIGCL LVAIVAGAVL FWRKRQRERV FAVADVSVQH DPKGCLGHLK QYKFKEIRKA
301: TNNFSQKNIL GEGGYGIVYK GDLDGTTVAV KRLKDRDSVI GDGQFHTEIE VISLAVHRNL LHLTGFCIAN NERLLVYPYM PNGTVASKLK ECVNGEPTLD
401: WPRRKRIALG ASQGLLYLHE QCDPKIIHRD IKACNVLLDE YLEAVVADFG LAKLLDHWMS HVITSVRGTL GRIPPEYLKS GHTSEKTDVF CFGLFLMELV
501: TGRVTLELHE NEYEKGGIRE LAKELLEQNQ LSLFVDSKLR SDYNSTELEE MVQIALLCTM YRPCHRPKMS EIVNMLEGGD RVAEKWEAVK NIEDPNPDWS
601: SEFMCIGINY NDDDQRNNSI ELQAIELSGP R
Best Arabidopsis Sequence Match ( AT1G60800.1 )
(BLAST)
001: MEGVRFVVWR LGFLVFVWFF DISSATLSPT GVNYEVTALV AVKNELNDPY KVLENWDVNS VDPCSWRMVS CTDGYVSSLD LPSQSLSGTL SPRIGNLTYL
101: QSVVLQNNAI TGPIPETIGR LEKLQSLDLS NNSFTGEIPA SLGELKNLNY LRLNNNSLIG TCPESLSKIE GLTLVDISYN NLSGSLPKVS ARTFKVIGNA
201: LICGPKAVSN CSAVPEPLTL PQDGPDESGT RTNGHHVALA FAASFSAAFF VFFTSGMFLW WRYRRNKQIF FDVNEQYDPE VSLGHLKRYT FKELRSATNH
301: FNSKNILGRG GYGIVYKGHL NDGTLVAVKR LKDCNIAGGE VQFQTEVETI SLALHRNLLR LRGFCSSNQE RILVYPYMPN GSVASRLKDN IRGEPALDWS
401: RRKKIAVGTA RGLVYLHEQC DPKIIHRDVK AANILLDEDF EAVVGDFGLA KLLDHRDSHV TTAVRGTVGH IAPEYLSTGQ SSEKTDVFGF GILLLELITG
501: QKALDFGRSA HQKGVMLDWV KKLHQEGKLK QLIDKDLNDK FDRVELEEIV QVALLCTQFN PSHRPKMSEV MKMLEGDGLA ERWEATQNGT GEHQPPPLPP
601: GMVSSSPRVR YYSDYIQESS LVVEAIELSG PR
Arabidopsis Description
NIK3Protein NSP-INTERACTING KINASE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZS4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.