Factsheet for Os01t0898500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
vacuole 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88041	Sorghum	cytosol	76.16	75.79
Zm00001d042504_P002	Maize	cytosol	72.26	70.55
Os08t0477500-01	Rice	plasma membrane	32.85	50.19
Os08t0376500-00	Rice	plastid	30.66	48.46
Os11t0614500-02	Rice	cytosol	28.71	48.16
Os11t0614400-01	Rice	plasma membrane	46.96	46.28
Os09t0462400-00	Rice	cytosol	38.2	45.91
Os08t0477100-01	Rice	plastid	47.69	45.48
Os08t0476900-01	Rice	plastid	46.72	44.65
Solyc02g090660.1.1	Tomato	cytosol, peroxisome, plastid	29.2	43.48
PGSC0003DMT400040802	Potato	mitochondrion	15.82	43.33
Os03t0393900-01	Rice	mitochondrion	45.01	42.82
Os12t0552200-01	Rice	cytosol, nucleus, plastid	37.71	34.68
Os08t0376550-00	Rice	cytosol	14.36	32.6
Os03t0640000-00	Rice	cytosol	22.14	20.63
Os03t0254400-01	Rice	cytosol	23.11	20.26
Os03t0784100-00	Rice	cytosol	22.87	20.0
Os06t0677000-00	Rice	plastid	20.19	17.26
Os12t0611300-00	Rice	cytosol, peroxisome, plastid	19.71	15.52
Os07t0144500-00	Rice	mitochondrion, plastid	15.33	15.14

Protein Annotations

Gene3D:3.40.1090.10	EntrezGene:4325111	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:BAB86082.1	ProteinID:BAC06905.1
ProteinID:BAF07008.1	ProteinID:BAS75725.1	ProteinID:EAZ14495.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EnsemblPlantsGene:Os01g0898500	EnsemblPlants:Os01t0898500-01	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF11	UniProt:Q8S0E1	SUPFAM:SSF52151	TMHMM:TMhelix	UniParc:UPI00000A5419
RefSeq:XP_015624009.1	:	:	:	:	:

Description

endosperm-specific gene 20, Patatin-related phospholipase A II alpha, patatin-like protein 2, patatin-like proteinSimilar to Patatin (Fragment). (Os01t0898500-01)

Coordinates

chr1:+:39066177..39068629

Molecular Weight (calculated)

45579.6 Da

IEP (calculated)

8.222

GRAVY (calculated)

-0.101

Length

411 amino acids

Sequence
(BLAST)

001: MEKNCACPPP SKGNMITILS IDGGGVKGII PAVILSFLES KLQELDGKDA RIANYFDAIA GTSTGGLIAG MLAAPSLGNA NQPCYAKDIV PFYLKHSPHI
101: FPHRTGFFGW FFNILGIIKM AIGPKYDGKY LHRLINDLLG ETRMKETLTN VVIPTFDVKC VKPIIFSTFK ARRKPLKNAC LADVCIGTSA APTFLPAHYF
201: ETVDHTGASQ SFNIIDGGMA ANNPTLVTMG EITKQIKRKS EEFPKAEPLD YRKYLVISLG TGLPEHDIMF DARNVAKWGI FRWLVDKDTM PLLNMFFHAS
301: SDMADTLVAD LFQAIGCSHQ LLRIQDHNIP IGAISNDLST KDHLQLLVKI GENLLKKPLS KEECEKNNIE PEPNLHGDHV TTYADMLTRF AKLLSDERKL
401: RLHNMKLDAK P

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.