Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0643000-01 | |
| Os04t0534400-01 | |
| Os08t0156700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77610.1 | Os02t0643000-01 | AT3G60600.1 | 21798944 |
| AT1G77610.1 | Os04t0534400-01 | AT3G60600.1 | 21798944 |
| AT1G77610.1 | Os08t0156700-01 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G225300.2 | Wheat | plasma membrane | 92.88 | 92.88 |
| TraesCS7A01G324800.1 | Wheat | plasma membrane | 92.58 | 92.58 |
| TraesCS7D01G321200.1 | Wheat | plasma membrane | 91.99 | 91.99 |
| EES13196 | Sorghum | plasma membrane | 90.5 | 88.92 |
| HORVU7Hr1G077640.13 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 93.18 | 87.47 |
| Zm00001d035007_P001 | Maize | plasma membrane | 83.68 | 84.68 |
| GSMUA_Achr3P22140_001 | Banana | plasma membrane | 84.57 | 83.58 |
| Bra003677.1-P | Field mustard | plasma membrane | 82.79 | 83.04 |
| VIT_18s0001g02970.t01 | Wine grape | plasma membrane | 83.68 | 82.94 |
| AT1G77610.1 | Thale cress | plasma membrane | 82.49 | 82.74 |
| Os04t0692000-02 | Rice | plasma membrane | 85.76 | 82.57 |
| CDX68051 | Canola | plasma membrane | 82.2 | 82.44 |
| CDX79213 | Canola | plasma membrane | 82.2 | 82.44 |
| Bra015662.1-P | Field mustard | plasma membrane | 82.2 | 82.2 |
| CDX87511 | Canola | plasma membrane | 82.2 | 82.2 |
| CDX88379 | Canola | plasma membrane | 81.9 | 81.9 |
| GSMUA_Achr6P18770_001 | Banana | plasma membrane | 81.9 | 80.94 |
| CDX96572 | Canola | plasma membrane | 81.31 | 80.12 |
| CDY38825 | Canola | plasma membrane | 81.31 | 80.12 |
| KRH53233 | Soybean | plasma membrane | 81.9 | 80.0 |
| Bra016403.1-P | Field mustard | plasma membrane | 81.31 | 79.88 |
| AT1G21870.1 | Thale cress | plasma membrane | 80.71 | 79.77 |
| Solyc06g060370.2.1 | Tomato | plasma membrane | 80.42 | 79.71 |
| PGSC0003DMT400045308 | Potato | plasma membrane | 80.42 | 79.71 |
| KRH16322 | Soybean | plasma membrane | 80.42 | 79.24 |
| KRH18757 | Soybean | plasma membrane | 80.42 | 79.24 |
| KRH64681 | Soybean | plasma membrane | 81.01 | 79.13 |
| Solyc11g012880.1.1 | Tomato | plasma membrane | 77.15 | 77.15 |
| CDY25067 | Canola | peroxisome, plasma membrane, plastid | 33.83 | 66.67 |
| CDY38193 | Canola | peroxisome, plasma membrane, plastid | 33.83 | 66.67 |
| CDY63382 | Canola | peroxisome, plasma membrane, plastid | 33.83 | 66.67 |
| CDY70208 | Canola | peroxisome, plasma membrane, plastid | 33.83 | 66.67 |
| CDX79216 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.0 | 47.64 |
| CDX79220 | Canola | mitochondrion | 46.59 | 32.37 |
| Os03t0286300-01 | Rice | golgi, plasma membrane, plastid | 30.56 | 31.99 |
| Os05t0121900-00 | Rice | endoplasmic reticulum, plasma membrane, plastid | 27.6 | 27.35 |
| Os03t0702700-02 | Rice | plasma membrane | 16.62 | 22.22 |
| Os08t0135100-01 | Rice | peroxisome, plasma membrane, vacuole | 21.66 | 20.86 |
| Os05t0494500-01 | Rice | plasma membrane | 19.88 | 18.93 |
| Os01t0802850-00 | Rice | cytosol, golgi, plasma membrane | 19.88 | 18.56 |
| Os11t0139400-01 | Rice | plastid | 20.18 | 17.53 |
| Os12t0136100-00 | Rice | peroxisome | 20.18 | 15.89 |
| Os06t0153200-02 | Rice | peroxisome | 18.4 | 14.39 |
| Os01t0749900-01 | Rice | cytosol | 18.4 | 13.16 |
| Os03t0622700-00 | Rice | mitochondrion | 14.54 | 10.36 |
Protein Annotations
| EMBL:AK063987 | EnsemblPlants:Os08t0104900-01 | EnsemblPlantsGene:Os08g0104900 | EntrezGene:4344442 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:Sugar_P_trans_dom | PANTHER:PTHR44674 |
| PFAM:PF03151 | ProteinID:BAD08930.1 | ProteinID:BAF22696.1 | ProteinID:BAT03437.1 | RefSeq:XP_015648140.1 | SUPFAM:SSF103481 |
| TMHMM:TMhelix | UniParc:UPI000023AC70 | UniProt:Q6ZJN0 | MapMan:24.2.1.1.2 | : | : |
Description
Protein of unknown function DUF6, transmembrane domain containing protein. (Os08t0104900-01);Protein of unknown function DUF6, transmembrane domain containing protein. (Os08t0104900-02)
Coordinates
chr8:-:268805..272077
Molecular Weight (calculated)
37836.3 Da
IEP (calculated)
9.350
GRAVY (calculated)
0.706
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEAKMGDVA TIRAVLAILQ WWGFNVTVII MNKWIFQKLE FKFPLTVSCV HFICSSIGAY IAIKILKMKP LIEVAPEDRW RRIFPMSFVF CINIVLGNVS
101: LRYIPVSFMQ TIKSFTPATT VILQWLVWRK YFEWRIWASL VPIVGGIMLT SITELSFNMF GFCAAMVGCL ATSTKTILAE SLLHGYKFDS INTVYYMAPF
201: ATMILSVPAI VLEGSGVINW LYTYDSIVPA LIIITTSGVL AFCLNFSIFY VIHSTTAVTF NVAGNLKVAV AVLVSWMIFR NPISAMNAVG CAITLVGCTF
301: YGYVRHLISQ QSVNSSPRTP RSRMEMLPLV GDKQEKI
101: LRYIPVSFMQ TIKSFTPATT VILQWLVWRK YFEWRIWASL VPIVGGIMLT SITELSFNMF GFCAAMVGCL ATSTKTILAE SLLHGYKFDS INTVYYMAPF
201: ATMILSVPAI VLEGSGVINW LYTYDSIVPA LIIITTSGVL AFCLNFSIFY VIHSTTAVTF NVAGNLKVAV AVLVSWMIFR NPISAMNAVG CAITLVGCTF
301: YGYVRHLISQ QSVNSSPRTP RSRMEMLPLV GDKQEKI
001: MEEGSMFRSL LAILQWWGFN VTVIIMNKWI FQKLDFKFPL SVSCVHFICS SIGAYIVIKV LKLKPLIVVD PEDRWRRIFP MSFVFCINIV LGNVSLRYIP
101: VSFMQTIKSF TPATTVVLQW LVWRKYFDWR IWASLVPIVG GILLTSVTEL SFNMFGFCAA LFGCLATSTK TILAESLLHG YKFDSINTVY YMAPFATMIL
201: GIPALLLEGS GILSWFEAHP APWSALIIIL SSGVLAFCLN FSIFYVIHST TAVTFNVAGN LKVAVAVMVS WLIFRNPISY MNAVGCGITL VGCTFYGYVR
301: HMLSQQTPGT PRTPRTPRSK MELLPLVNND KLEGKV
101: VSFMQTIKSF TPATTVVLQW LVWRKYFDWR IWASLVPIVG GILLTSVTEL SFNMFGFCAA LFGCLATSTK TILAESLLHG YKFDSINTVY YMAPFATMIL
201: GIPALLLEGS GILSWFEAHP APWSALIIIL SSGVLAFCLN FSIFYVIHST TAVTFNVAGN LKVAVAVMVS WLIFRNPISY MNAVGCGITL VGCTFYGYVR
301: HMLSQQTPGT PRTPRTPRSK MELLPLVNND KLEGKV
Arabidopsis Description
UDP-GALT1UDP-galactose transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C521]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.