Factsheet for PGSC0003DMT400005544

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011590.2.1	Tomato	cytosol	94.93	94.93
PGSC0003DMT400005534	Potato	cytosol	40.09	86.14
PGSC0003DMT400005538	Potato	cytosol	80.18	84.47
PGSC0003DMT400005542	Potato	cytosol	78.8	78.8
PGSC0003DMT400005546	Potato	cytosol	78.8	78.44
PGSC0003DMT400005549	Potato	cytosol	75.58	76.28
PGSC0003DMT400051271	Potato	cytosol	77.42	74.01
PGSC0003DMT400005536	Potato	cytosol	73.73	73.73
PGSC0003DMT400005547	Potato	cytosol	73.73	73.73
PGSC0003DMT400005557	Potato	cytosol	72.35	71.69
PGSC0003DMT400005558	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.19	71.56
PGSC0003DMT400011275	Potato	cytosol	51.61	69.57
PGSC0003DMT400005572	Potato	cytosol	71.43	68.89
PGSC0003DMT400005571	Potato	cytosol	70.51	67.7
PGSC0003DMT400005552	Potato	cytosol	68.2	67.27
PGSC0003DMT400028619	Potato	cytosol	68.2	66.97
PGSC0003DMT400005551	Potato	mitochondrion	66.36	66.06
PGSC0003DMT400005561	Potato	cytosol	53.46	65.54
PGSC0003DMT400005532	Potato	cytosol	64.06	62.61
PGSC0003DMT400064983	Potato	cytosol	48.39	46.88
PGSC0003DMT400004531	Potato	cytosol	47.0	45.33
PGSC0003DMT400030631	Potato	cytosol	47.47	44.4
PGSC0003DMT400004540	Potato	cytosol	45.62	44.0
PGSC0003DMT400074054	Potato	cytosol	44.24	42.48
PGSC0003DMT400094155	Potato	cytosol	40.09	39.01
PGSC0003DMT400051375	Potato	cytosol	40.09	38.16
PGSC0003DMT400022251	Potato	cytosol	32.26	37.63
PGSC0003DMT400063686	Potato	cytosol	36.41	35.27
PGSC0003DMT400050289	Potato	cytosol	37.79	35.19
PGSC0003DMT400006306	Potato	cytosol	12.9	22.58

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:102599054	MapMan:18.8.1.4	Gene3D:3.40.30.10	ProteinID:AAA68430	ProteinID:AAA68430.1
EMBL:AB061250	ProteinID:BAC23036	ProteinID:BAC23036.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0009607
GO:GO:0016740	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	EMBL:J03679	UniProt:M0ZQ21	PFAM:PF00043	PFAM:PF02798	EnsemblPlantsGene:PGSC0003DMG400002167
PGSC:PGSC0003DMG400002167	EnsemblPlants:PGSC0003DMT400005544	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002955F19	RefSeq:XP_006367669.1	SEG:seg

Description

Glutathion S-transferase [Source:PGSC_GENE;Acc:PGSC0003DMG400002167]

Coordinates

chr9:-:1019733..1021010

Molecular Weight (calculated)

25002.0 Da

IEP (calculated)

4.939

GRAVY (calculated)

-0.286

Length

217 amino acids

Sequence
(BLAST)

001: MAEVKLLGLS YSPFSHRVEW ALKIKGVKYE FIEEDLQNKS PLLLQSNPIH KKIPVLIHNG KCICESMVIL EYIDEAFEGP SILPKDPYDR ALARFWAKYV
101: EDKGAAVWKS FFSKGEEQEK AKEEAYEMLK ILDNEFKDKK CFVGDKFGFA DIVANGAALY LGILEEVSGV VLVTSEKFPN FCAWRDEYCT QNEEYFPSRD
201: ELLIRYRAYI QPVDASK

Best Arabidopsis Sequence Match ( AT1G78340.1 )
(BLAST)

001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV

Arabidopsis Description

GSTU22Glutathione S-transferase U22 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.