Factsheet for PGSC0003DMT400005547

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005534	Potato	cytosol	39.63	85.15
PGSC0003DMT400005549	Potato	cytosol	79.26	80.0
PGSC0003DMT400005542	Potato	cytosol	77.42	77.42
PGSC0003DMT400005557	Potato	cytosol	76.04	75.34
PGSC0003DMT400005558	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.42	74.67
PGSC0003DMT400005544	Potato	cytosol	73.73	73.73
PGSC0003DMT400005546	Potato	cytosol	73.27	72.94
PGSC0003DMT400005551	Potato	mitochondrion	73.27	72.94
PGSC0003DMT400005538	Potato	cytosol	69.12	72.82
PGSC0003DMT400005536	Potato	cytosol	72.81	72.81
PGSC0003DMT400051271	Potato	cytosol	75.58	72.25
PGSC0003DMT400005571	Potato	cytosol	75.12	72.12
PGSC0003DMT400005572	Potato	cytosol	74.19	71.56
PGSC0003DMT400005552	Potato	cytosol	71.89	70.91
PGSC0003DMT400005561	Potato	cytosol	57.14	70.06
PGSC0003DMT400011275	Potato	cytosol	49.31	66.46
PGSC0003DMT400028619	Potato	cytosol	67.28	66.06
PGSC0003DMT400005532	Potato	cytosol	66.82	65.32
PGSC0003DMT400064983	Potato	cytosol	50.23	48.66
PGSC0003DMT400030631	Potato	cytosol	50.69	47.41
PGSC0003DMT400004531	Potato	cytosol	48.85	47.11
PGSC0003DMT400004540	Potato	cytosol	46.54	44.89
PGSC0003DMT400051375	Potato	cytosol	42.86	40.79
PGSC0003DMT400074054	Potato	cytosol	41.47	39.82
PGSC0003DMT400094155	Potato	cytosol	40.55	39.46
PGSC0003DMT400022251	Potato	cytosol	32.72	38.17
PGSC0003DMT400063686	Potato	cytosol	38.25	37.05
PGSC0003DMT400050289	Potato	cytosol	38.71	36.05
PGSC0003DMT400006306	Potato	cytosol	13.36	23.39

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:102600687	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	UniProt:M0ZQ24	PFAM:PF00043	PFAM:PF02798	EnsemblPlantsGene:PGSC0003DMG400002169	PGSC:PGSC0003DMG400002169
EnsemblPlants:PGSC0003DMT400005547	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000295C510	RefSeq:XP_006367673.1	SEG:seg	:

Description

Glutathione-S-transferase [Source:PGSC_GENE;Acc:PGSC0003DMG400002169]

Coordinates

chr9:-:1014779..1016102

Molecular Weight (calculated)

25003.0 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.283

Length

217 amino acids

Sequence
(BLAST)

001: MVDVKLLGLW YSPFSHRVEW ALKIKGIEYE YIEDDLHNKS SLLLESNPIH KKVPVLIHNG KPICESMVIV EYIDEAFEGP SILPKDPYDR AIARFWAKFL
101: DDKMAPVGKS FFLKGEEQEK AKEEAYEILK ILDNELKDKK LFVGDKFGFA DIAANFVGIW VGVFEEASGE VLVTKENFPN LCAWRDEYIN CSENKEYLPP
201: RNELVAHFQA RFQAAPK

Best Arabidopsis Sequence Match ( AT1G78340.1 )
(BLAST)

001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV

Arabidopsis Description

GSTU22Glutathione S-transferase U22 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.