Factsheet for PGSC0003DMT400007390

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005850.1.1	Tomato	cytosol	90.42	31.22
Zm00001d035209_P001	Maize	extracellular, nucleus, peroxisome	29.5	23.91
Os03t0804400-01	Rice	cytosol, mitochondrion, nucleus	54.02	22.0
VIT_01s0026g01230.t01	Wine grape	cytosol	56.7	21.48
HORVU2Hr1G052050.2	Barley	cytosol	55.56	21.23
PGSC0003DMT400023748	Potato	cytosol	60.15	20.34
CDY20634	Canola	cytosol	57.09	19.71
AT1G10385.1	Thale cress	nucleus	56.7	19.63
EER96033	Sorghum	mitochondrion, plastid	58.62	19.52
CDY20945	Canola	cytosol	56.32	19.44
Zm00001d019104_P001	Maize	mitochondrion	57.85	19.33
Bra018442.1-P	Field mustard	cytosol	55.94	19.31
GSMUA_Achr2P12490_001	Banana	mitochondrion	56.7	19.02
Zm00001d007760_P001	Maize	mitochondrion, plastid	56.7	19.02
KRH69407	Soybean	nucleus, plastid	54.41	18.93
GSMUA_Achr4P17210_001	Banana	mitochondrion	55.94	18.89
TraesCS2B01G263000.1	Wheat	mitochondrion, plastid	56.32	18.82
Os07t0200000-01	Rice	plasma membrane	56.7	18.78
TraesCS2D01G242400.3	Wheat	mitochondrion, plastid	56.32	18.77
TraesCS2A01G244100.1	Wheat	mitochondrion, plastid	55.94	18.74
KRH74737	Soybean	cytosol, plastid	53.26	18.53
HORVU5Hr1G109160.2	Barley	mitochondrion	54.41	18.32
OQU90803	Sorghum	mitochondrion, plastid	54.41	18.3
TraesCS5B01G462100.1	Wheat	mitochondrion	54.41	18.18
Zm00001d013049_P002	Maize	plastid	53.26	17.94
TraesCS5A01G453100.1	Wheat	mitochondrion	53.64	17.93
TraesCS5D01G463900.1	Wheat	mitochondrion	54.02	17.36
PGSC0003DMT400026847	Potato	nucleus	29.5	9.92
PGSC0003DMT400062418	Potato	cytosol	24.14	8.33
HORVU2Hr1G099060.1	Barley	cytosol	2.68	8.24
GSMUA_Achr4P17220_001	Banana	extracellular	0.77	2.94
GSMUA_Achr7P17120_001	Banana	cytosol	0.38	0.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400007390	EnsemblPlantsGene:PGSC0003DMG400002839	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo84	InterPro:Exo84_C	PANTHER:PTHR21426	PANTHER:PTHR21426:SF15	PFAM:PF16528	PGSC:PGSC0003DMG400002839
SEG:seg	SUPFAM:SSF74788	UniParc:UPI0002967CAE	UniProt:M0ZSW5	MapMan:22.6.3.8	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002839]

Coordinates

chr4:+:432934..435708

Molecular Weight (calculated)

27859.4 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.008

Length

261 amino acids

Sequence
(BLAST)

001: MANDTRSKQT LTPSALLSLQ KVITEQKQKL AAQLAEASFK PSVGAAELRS AVQALKRLGD GPRAHTLMLS SHQQKLHGNM QGLRPSGTSH GVAYSAALSQ
101: LVFSTMAQAT SDSLSLFDDE PSYTSELVTW AVNQTENFAH LIKRYVIASP AASGCLRPVA ESVHISLGHC SLLEARGLAL SPVLLKNFKP CVEQALYANI
201: KRIEQCTAAL AAADDWSLTY PPIGSRSLGT SSLAGVITSQ PKLSSSAHKF NTMVQVINFA L

Best Arabidopsis Sequence Match ( AT5G49830.3 )
(BLAST)

001: MAAKTARSKA TPTKENGVRV EEGLSLFKSD KFDADAYVQS KCSINEKEIV IVEWILGSSR FYTLEKMMSN VTILIACMDI KQLCSYLLDL KRASAEEMRR
101: SVYANYPAFI RTSKEISDLE GELSSIRNLL STQATLIHGL ADGVNIDDDK VSDESLANGL LNFEDNGLSD LEKWATEFPD HLDALLAERR VDEALAAFDE
201: GEILVSQANE KHTLSSSVLS SLQFAIAERK QKLADQLAKA ACQPSTRGGE LRSAIAALKR LGDGPRAHTV LLDAHFQRYQ YNMQSLRPSS TSYGGAYTAA
301: LSQLVFSAIS QASSDSLGIF GKEPAYSSEL VTWATKQTEA FSLLVKRHAL ASSAAAGGLR AAAECAQIAL GHCSLLEARG LSLCPVLLKH FKPIVEQALE
401: ANLKRIEENT AAMAAADDWV LTSPPAGSRH ASTAFQNKLT SSAHRFNLMV QDFFEDVGPL LSMQLGSKAL EGLFRVFNSY VDVLVRALPG SIEEEDPNFE
501: SSCNKIVQMA ETEANQLALL ANASLLADEL LPRAAMKLSL DQTGQRTDDL RRPLDRQNRN PEQREWKRRL LSTVDKLKDA FCRQHALDLI FTEEGDSHLS
601: ADMYVNIDEN GEDVDFFPSL IFQELFAKLN RMASLAADMF VGRERFAISL LMRLTETVIL WLSGDQSFWD DIEEGPRPLG PLGLRQLYLD MKFVICFASQ
701: GRYLSRNLHR GTNEIISKAL AAFTATGIDP YSELPEDDWF NDICVDAMER LSGKTKGNNG DVHSPTASVS AQSVSSARSH GSY

Arabidopsis Description

EXO84BExocyst complex component 84B [Source:UniProtKB/TrEMBL;Acc:F4K7F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.