Factsheet for PGSC0003DMT400009856

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P11630_001	Banana	cytosol	42.22	20.99
PGSC0003DMT400078655	Potato	mitochondrion	28.89	10.32
GSMUA_Achr4P25270_001	Banana	nucleus, plastid	41.11	9.32
VIT_08s0007g05020.t01	Wine grape	plastid	47.78	7.64
KRH32502	Soybean	plastid	48.89	7.32
KRH19891	Soybean	plastid	45.56	6.59
AT5G03420.1	Thale cress	plastid	38.89	5.85
PGSC0003DMT400068857	Potato	cytosol	26.67	5.07
PGSC0003DMT400045404	Potato	mitochondrion, plastid	28.89	4.94
CDY10381	Canola	nucleus	38.89	3.7
Bra009530.1-P	Field mustard	nucleus	37.78	3.57
CDX70309	Canola	nucleus	37.78	3.56
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	3.33	0.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400009856	EnsemblPlantsGene:PGSC0003DMG402003864	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PANTHER:PTHR10343	PANTHER:PTHR10343:SF64	PFAM:PF16561	PGSC:PGSC0003DMG402003864	SUPFAM:SSF81296
UniParc:UPI00029560B0	UniProt:M0ZX16	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402003864]

Coordinates

chr9:-:5065753..5068364

Molecular Weight (calculated)

10314.1 Da

IEP (calculated)

4.185

GRAVY (calculated)

-0.504

Length

90 amino acids

Sequence
(BLAST)

1: MDPHESSDPI GEDIQLSSDI IDPIGEDIQA SSDIIDPIGM REPRLWKTVL WLYPGIYEIK FVVDDHWTTD PQRESVTKGS IHNNVLRVDR

Best Arabidopsis Sequence Match ( AT5G03420.1 )
(BLAST)

001: MATISQIPFS ISFPCFEFRK PSFYYHQPQL FVSYLNSTKK HSFICFACST KQTRVRKRVK SNEELRSEIM QFVALAGLPE GHVPSMKELS AHGRVDLANI
101: VRRRGYKFIK ELVANSGMEE DCNELVADSE DNNTNIETGG SRACLEDSST DLSKEAEKQG SLSKDESSLA GVLSLENSFS NLGDSNHSGE ITEKIFKIES
201: VELNEIADIE NSSSEASVFA NHSQDLYDTS SCPDIEAGNV SMTEDEEVND VDKDFSLTFD HYTSPTSNHY TSPDLNSIKH VDIATGSSYD LTSENTMTNV
301: ENFQNQQIDD IAANRSGSAD DSLVESEDND WMSGLSSCTS SIEEKTTRFI QNGYLDTVGA DENDIPNESC PEESSETTKG GEYIGDSLGG PRIMSTPLNG
401: SALALKEIIH ATEVNSSDRN SDQRDGSVGL DTDPHHETRK RENQVEIDRL RFMLDQKELE LSRLKEQIEK EKLSLSVLQR QAETEIQKAQ MLISEKEVEL
501: QEAEESLSGL QEVVIEYCGD GNAVEVTGSF NGWQHRVGME LQASKSIGKQ KCWSTLLWLY PGTYEIKFIV DGQWITDPQK DSVTRGHISN NILKVDSQ

Arabidopsis Description

PTSTProtein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.