Factsheet for PGSC0003DMT400045404

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006930.2.1	Tomato	cytosol	76.05	84.75
PGSC0003DMT400068857	Potato	cytosol	44.87	49.89
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	18.25	45.5
GSMUA_Achr7P12210_001	Banana	cytosol	27.95	36.57
VIT_01s0026g01510.t01	Wine grape	plastid	37.45	36.41
KRH69376	Soybean	plastid	34.03	34.69
KRH74757	Soybean	plastid	34.03	34.62
AT1G27070.1	Thale cress	plastid	34.79	34.4
CDY16216	Canola	plastid	32.7	33.92
CDY14708	Canola	plastid	32.7	33.86
GSMUA_Achr9P10940_001	Banana	cytosol	29.85	32.51
TraesCS4B01G029700.2	Wheat	mitochondrion	29.66	32.37
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	27.95	31.96
Os03t0686900-01	Rice	plastid	31.56	31.38
Zm00001d033529_P001	Maize	plastid	30.61	29.76
PGSC0003DMT400009856	Potato	cytosol	4.94	28.89
OQU91183	Sorghum	plastid	30.61	27.62
TraesCS4D01G026700.2	Wheat	plastid	29.28	27.55
Zm00001d013530_P001	Maize	plastid	29.28	26.46
HORVU4Hr1G004470.4	Barley	mitochondrion	31.18	25.55
PGSC0003DMT400078655	Potato	mitochondrion	9.32	19.44
Bra024663.1-P	Field mustard	mitochondrion, nucleus	32.7	19.03
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	7.41	12.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400045404	EnsemblPlantsGene:PGSC0003DMG400017617	EntrezGene:102595795	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561
PGSC:PGSC0003DMG400017617	RefSeq:XP_006357253.1	SEG:seg	SUPFAM:SSF81296	UniParc:UPI0002964E40	UniProt:M1BHL8
MapMan:3.2.1.1	:	:	:	:	:

Description

Isoamylase N-terminal domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017617]

Coordinates

chr5:-:6089071..6096185

Molecular Weight (calculated)

59219.6 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.686

Length

526 amino acids

Sequence
(BLAST)

001: MVLTQFARPY NFCSFLSLPA TPCKIFVLNP RKRVHFLRKS GGFELVLGKK MCSLKFVELI RKGKEEHSVC CCCCGEGSQS EGDMKLEADI LAFMEKSQNP
101: DAFPSRKDLE KAGRVDLIEA IRNRGGWYSF GWDSEEEPPT DQENVPEAEE MDFDIEELRR RVEKYQESDS GSDFSSGDSS QPASSSGRSL EAVVEEDSAV
201: EGILNRLEKE RISSLGINTS KYGYGANHSS RDNIDDRSSG TTTTGRDPYR TDLGKNGSLT TCSPKKGGLS DSGGQLNHKY TPDMWRSWST QRACPEGTDF
301: EVGEVDLDKR PNGGKTETSR DDVFTVKENS SETPERWIYN NHNDISTRLQ HLELELSSTL RSLRSKSQEF SSMEVLGKSR SDFQKLLDAR EFQENDVINA
401: QKRLRSIRAK LAILEGKVAL TLTDAEKLLA KKQKRIDGAR KALQFLRTTQ IVWHNSASEV LLTGSFDGWT TQRKMEKLRT GVFSVSLKLY PGSYEIKFIV
501: DGIWKVDPLR PVVHNNGHEN NLLIVT

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.