Factsheet for Bra024663.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16216	Canola	plastid	56.08	100.0
CDY14708	Canola	plastid	53.21	94.69
AT1G27070.1	Thale cress	plastid	33.74	57.33
Solyc01g010470.2.1	Tomato	plastid	10.51	51.35
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	11.06	47.39
PGSC0003DMT400068857	Potato	cytosol	19.25	36.79
KRH74757	Soybean	plastid	20.69	36.17
Solyc05g006930.2.1	Tomato	cytosol	18.81	36.02
GSMUA_Achr7P12210_001	Banana	cytosol	15.93	35.82
KRH69376	Soybean	plastid	20.24	35.47
VIT_01s0026g01510.t01	Wine grape	plastid	20.69	34.57
PGSC0003DMT400045404	Potato	mitochondrion, plastid	19.03	32.7
TraesCS4B01G029700.2	Wheat	mitochondrion	16.59	31.12
Os03t0686900-01	Rice	plastid	17.81	30.43
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	15.49	30.43
GSMUA_Achr9P10940_001	Banana	cytosol	15.93	29.81
Zm00001d033529_P001	Maize	plastid	17.15	28.65
TraesCS4D01G026700.2	Wheat	plastid	16.26	26.3
OQU91183	Sorghum	plastid	16.81	26.07
HORVU4Hr1G004470.4	Barley	mitochondrion	18.47	26.01
Zm00001d013530_P001	Maize	plastid	15.82	24.57
Bra025642.1-P	Field mustard	cytosol	5.97	19.57
Bra009530.1-P	Field mustard	nucleus	10.84	10.28

Protein Annotations

EnsemblPlants:Bra024663.1	EnsemblPlants:Bra024663.1-P	EnsemblPlantsGene:Bra024663	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561
SEG:seg	SUPFAM:SSF81296	UniParc:UPI000254212A	UniProt:M4E7A8	MapMan:3.2.1.1	:

Description

AT1G27070 (E=9e-192) | 5'-AMP-activated protein kinase-related

Coordinates

chrA09:-:23718045..23722783

Molecular Weight (calculated)

100825.0 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.725

Length

904 amino acids

Sequence
(BLAST)

001: MGLINKRLRA LRKKLNRITQ MEESISQGKT LNKEQQEVLR SKPSVLILIE ELDKLRAPLS AAVSEEITLA TTHHHDQAHV ADAPEEEEAK TLEDLVNLLY
101: FGSLFDVKSQ NELASIMLTR THERGCCLVY DTVTDESTDL LCDKDLDLIS ELWTMMVSRP ADSFLSHKNA LERCVEHAKL WLANSDQPIA SNCNVSYAGL
201: REKLKKIMGS NYFTITPEMV APVEAAAAAA GNYGSYQVPA DTEQKEEDAS NFKEQESAVN DQSEQPKDES VTEGEVVQGQ QEQGYTQVEG GRSKRDYQQQ
301: YVPRGTHQNQ RGHRGARRGH SNAPRGGRGG GGGGYSNGRY ESYDNSGGNG YQRSHYNNRG RGRGGGGGNG HSYNNNQDSN DRLIEKRTET VRRNAPKMVS
401: LNSGPVSSFA YMNSLIDSDT LLPLSSFSAF NPICSGKLSL LADGKSCGPV QWFLEVKLRK KGCCFRRSGV LRMCNNQDLG WDSDKDLETE ILEFMKNSEK
501: PGMFPSKKDL IRSERFDLVE RIVNQGGWLS MGWDLDEQQE EEVRVKEKNV VLGDLPIEKQ LHNLSSNASS SREEVDGKNE SGIEGILTRL EKERNLSLGI
601: NLSGKGESNG AMYDDITLNG SLPRSSIIVT ASEFQEVDGS RSSGEYGQSR YQEAKPVSGN NSSTSETWRT WSMRRAGFTD EDFEAAEISS SSLVGLKKDD
701: TNKDSNGKDK TASYSEDINT THIKSRLQNL QSELSSVLQS LRSPPDEVVT SKDSEIKSGN LENLNDDWEF KENEIIYAQN KLRSTRAKLA VLEGKMSMAI
801: IDAQRIVREK QRKIDHARRA LRLLRTASIV WPNSASEVLL TGSFDGWSTQ RKMKKAQNGV FSLSLKLYPG KYQIKFVVDG QWKVDPLRPI VTCDGYENNL
901: LIIS

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.