CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14708	Canola	plastid	94.87	94.69
AT1G27070.1	Thale cress	plastid	60.16	57.33
Bra024663.1-P	Field mustard	mitochondrion, nucleus	100.0	56.08
Solyc01g010470.2.1	Tomato	plastid	18.74	51.35
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	19.72	47.39
PGSC0003DMT400068857	Potato	cytosol	34.32	36.79
KRH74757	Soybean	plastid	36.88	36.17
Solyc05g006930.2.1	Tomato	cytosol	33.53	36.02
GSMUA_Achr7P12210_001	Banana	cytosol	28.4	35.82
KRH69376	Soybean	plastid	36.09	35.47
VIT_01s0026g01510.t01	Wine grape	plastid	36.88	34.57
PGSC0003DMT400045404	Potato	mitochondrion, plastid	33.92	32.7
TraesCS4B01G029700.2	Wheat	mitochondrion	29.59	31.12
Os03t0686900-01	Rice	plastid	31.76	30.43
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	27.61	30.43
GSMUA_Achr9P10940_001	Banana	cytosol	28.4	29.81
Zm00001d033529_P001	Maize	plastid	30.57	28.65
TraesCS4D01G026700.2	Wheat	plastid	28.99	26.3
OQU91183	Sorghum	plastid	29.98	26.07
Zm00001d013530_P001	Maize	plastid	28.21	24.57
HORVU4Hr1G004470.4	Barley	mitochondrion	30.97	24.45
CDY30270	Canola	cytosol	11.44	18.71
CDX74426	Canola	golgi, mitochondrion, plastid	11.44	17.68
CDY10381	Canola	nucleus	17.55	9.41
CDX70309	Canola	nucleus	16.17	8.59

Protein Annotations

EnsemblPlants:CDY16216	EnsemblPlantsGene:GSBRNA2T00090672001	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561	ProteinID:CDY16216
ProteinID:CDY16216.1	SEG:seg	SUPFAM:SSF81296	UniParc:UPI0004EE3037	UniProt:A0A078FT00	MapMan:3.2.1.1

Description

BnaA09g29500DBnaA09g29500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT00]

Coordinates

chrLK032061:-:564391..566710

Molecular Weight (calculated)

56738.9 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.576

Length

507 amino acids

Sequence
(BLAST)

001: MVSLNSGPVS SFAYMNSLID SDTLLPLSSF SAFNPICSGK LSLLADGKSC GPVQWFLEVK LRKKGCCFRR SGVLRMCNNQ DLGWDSDKDL ETEILEFMKN
101: SEKPGMFPSK KDLIRSERFD LVERIVNQGG WLSMGWDLDE QQEEEVRVKE KNVVLGDLPI EKQLHNLSSN ASSSREEVDG KNESGIEGIL TRLEKERNLS
201: LGINLSGKGE SNGAMYDDIT LNGSLPRSSI IVTASEFQEV DGSRSSGEYG QSRYQEAKPV SGNNSSTSET WRTWSMRRAG FTDEDFEAAE ISSSSLVGLK
301: KDDTNKDSNG KDKTASYSED INTTHIKSRL QNLQSELSSV LQSLRSPPDE VVTSKDSEIK SGNLENLNDD WEFKENEIIY AQNKLRSTRA KLAVLEGKMS
401: MAIIDAQRIV REKQRKIDHA RRALRLLRTA SIVWPNSASE VLLTGSFDGW STQRKMKKAQ NGVFSLSLKL YPGKYQIKFV VDGQWKVDPL RPIVTCDGYE
501: NNLLIIS

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.