Factsheet for PGSC0003DMT400068857

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010470.2.1	Tomato	plastid	28.33	72.43
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	20.3	45.5
PGSC0003DMT400045404	Potato	mitochondrion, plastid	49.89	44.87
VIT_01s0026g01510.t01	Wine grape	plastid	42.49	37.15
GSMUA_Achr7P12210_001	Banana	cytosol	30.02	35.32
KRH69376	Soybean	plastid	38.05	34.88
KRH74757	Soybean	plastid	37.84	34.62
CDY16216	Canola	plastid	36.79	34.32
GSMUA_Achr9P10940_001	Banana	cytosol	33.83	33.13
CDY14708	Canola	plastid	35.31	32.87
TraesCS4B01G029700.2	Wheat	mitochondrion	33.4	32.78
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	31.71	32.61
AT1G27070.1	Thale cress	plastid	35.94	31.95
Os03t0686900-01	Rice	plastid	33.19	29.68
Zm00001d033529_P001	Maize	plastid	32.56	28.47
TraesCS4D01G026700.2	Wheat	plastid	33.19	28.09
OQU91183	Sorghum	plastid	33.4	27.1
PGSC0003DMT400009856	Potato	cytosol	5.07	26.67
Zm00001d013530_P001	Maize	plastid	31.5	25.6
HORVU4Hr1G004470.4	Barley	mitochondrion	33.4	24.61
Bra024663.1-P	Field mustard	mitochondrion, nucleus	36.79	19.25
PGSC0003DMT400078655	Potato	mitochondrion	9.3	17.46
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	9.09	14.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400068857	EnsemblPlantsGene:PGSC0003DMG400026781	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561	PGSC:PGSC0003DMG400026781
SEG:seg	SUPFAM:SSF81296	UniParc:UPI0002957384	UniProt:M1CJK8	MapMan:3.2.1.1	:

Description

Isoamylase N-terminal domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026781]

Coordinates

chr1:-:43197234..43205257

Molecular Weight (calculated)

53115.9 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.648

Length

473 amino acids

Sequence
(BLAST)

001: MGSFQVFKKL SKKRVGDSAY CLCRKGLGSE GDMELEEEIL AFMEISENPS VFPTRKELEK AGRVDLVEAI KNRGGWFSFG WDSEDDDTNT VNVNEVETVE
101: KDFDIEEFHD RVKSCQESDL LHENEAHFTG SGDSSSSQPA SSSGRLIETV AEEDSGIEGI LNRLEKERNS SLGIDLGKRG HTFHTSSRDN IDDRSFGTTD
201: ADRTDLGKND SLSKGSPMKD IRSDEELNHS VSPARWRKWS IQRAGLQDID FEAAEVALGK SWIEGTSEAS GDDAVNITES RFEALQRSKN GNNNEMSIRL
301: NHLELELSMT LCSLKSKSEE FSSKEVFGSS PSDSDAWEFQ ENEFMNGRER LRLIRAKLAV LEGKMTLAMI DAQKMLDEKQ KRIDRSSKAL QLLRTARIVW
401: TNSASEVLLA GSFDGWTTQR MMDKSSTGVF SLSLKLYPGR HEIKFVVDGI WKIDPLRPIV HNDGHENNLF IVT

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.