Factsheet for VIT_01s0026g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010470.2.1	Tomato	plastid	18.48	54.05
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	19.41	49.76
PGSC0003DMT400068857	Potato	cytosol	37.15	42.49
Solyc05g006930.2.1	Tomato	cytosol	34.75	39.83
GSMUA_Achr7P12210_001	Banana	cytosol	29.02	39.05
KRH69376	Soybean	plastid	37.15	38.95
KRH74757	Soybean	plastid	35.86	37.52
PGSC0003DMT400045404	Potato	mitochondrion, plastid	36.41	37.45
CDY16216	Canola	plastid	34.57	36.88
CDY14708	Canola	plastid	34.2	36.42
AT1G27070.1	Thale cress	plastid	35.67	36.28
GSMUA_Achr9P10940_001	Banana	cytosol	30.31	33.95
Os03t0686900-01	Rice	plastid	33.09	33.84
TraesCS4B01G029700.2	Wheat	mitochondrion	30.13	33.82
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	28.47	33.48
Zm00001d033529_P001	Maize	plastid	30.5	30.5
OQU91183	Sorghum	plastid	31.98	29.67
TraesCS4D01G026700.2	Wheat	plastid	30.31	29.34
Zm00001d013530_P001	Maize	plastid	31.05	28.87
HORVU4Hr1G004470.4	Barley	mitochondrion	31.61	26.64
Bra024663.1-P	Field mustard	mitochondrion, nucleus	34.57	20.69
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	11.09	19.54
VIT_08s0007g05020.t01	Wine grape	plastid	17.56	16.87

Protein Annotations

EntrezGene:100251843	wikigene:100251843	Gene3D:2.60.40.10	MapMan:3.2.1.1	InterPro:AMPK1_CBM	ProteinID:CCB56587
ProteinID:CCB56587.1	ncoils:Coil	UniProt:F6HPF9	EMBL:FN596002	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009791	GO:GO:0009987	GO:GO:0010581	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247
GO:GO:2000014	GO:GO:2001066	GO:GO:2001070	GO:GO:2001071	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	EntrezGene:LOC100251843	wikigene:LOC100251843	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47
SUPFAM:SSF81296	TIGR:TC60444	UniParc:UPI0001982AC9	ArrayExpress:VIT_01s0026g01510	EnsemblPlantsGene:VIT_01s0026g01510	EnsemblPlants:VIT_01s0026g01510.t01
unigene:Vvi.13737	RefSeq:XP_002269528	RefSeq:XP_002269528.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:10581689..10588189

Molecular Weight (calculated)

59909.6 Da

IEP (calculated)

4.540

GRAVY (calculated)

-0.407

Length

541 amino acids

Sequence
(BLAST)

001: MLSFTVPSCR FLVSRDLNLF PTFPSLVFLI DPGKVRQRKQ FRRLRLAGTR GIGSLARGVV RRCQEWESEG DWGLEEEILE FMKKSERPEA FPSRKELVDG
101: GRMDLVEAIV EKGGWLSLGW DLDAEEGVLD DDDDDDGRHV TDWDLIMRKA NDGDLVCGDG GGEANDLEVD EIRVSGLLEA DSSDLDSASS SGRSLEVAAE
201: DNTGIEGILK GLETHRNVTF GVGMREKGNG SILMNNNGDD WHSGNSTNAD SSGLGKISRQ TSSIHNKGII KDSGGKYSQM RSFSDLDGLG NSLKSEMWRT
301: WGVYRAGFSV MDVEAAEIAC NEARMEEVID ISKDEILAIS EGHDISKELN SHGKEVNHSE IQSRLQDMEL ELSSILRALK STSDGIVPLG NTSSSDDLQK
401: LSDALEFQEN EIMNSQDILR SLRAKLAVVE GKMALAIIDA QKLVEEKQKR IGDAHSTLQL LRSSCIVWPN SASEVLLAGS FDGWTTQRRM ERSSTGIFSL
501: CLRLYPGRYE IKFIVDGVWR IDPLRPLVHS DGYENNLLII T

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.