Factsheet for VIT_14s0006g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078655	Potato	mitochondrion	50.49	61.51
KRH38399	Soybean	cytosol	13.03	59.7
KRG97930	Soybean	cytosol, plastid	56.35	58.25
Bra025642.1-P	Field mustard	cytosol	51.47	57.25
AT5G39790.3	Thale cress	cytosol, plastid	51.47	56.43
KRH30945	Soybean	cytosol, plastid	54.4	56.23
CDY30270	Canola	cytosol	50.81	50.32
GSMUA_Achr7P10230_001	Banana	extracellular	50.16	50.0
CDX74426	Canola	golgi, mitochondrion, plastid	52.77	49.39
KXG29421	Sorghum	cytosol, plastid	49.19	49.03
TraesCS6A01G102300.1	Wheat	cytosol, plastid	45.93	48.29
TraesCS6B01G130700.1	Wheat	cytosol	45.93	48.29
TraesCS6D01G090900.1	Wheat	cytosol	45.6	47.95
Os02t0135900-01	Rice	plastid	47.23	47.39
Zm00001d015200_P003	Maize	plastid	47.88	44.41
Solyc02g091530.2.1	Tomato	nucleus	51.79	43.32
HORVU6Hr1G018500.10	Barley	plastid	45.6	41.06
VIT_01s0026g01510.t01	Wine grape	plastid	19.54	11.09
VIT_08s0007g05020.t01	Wine grape	plastid	15.96	8.7

Protein Annotations

EntrezGene:100255271	wikigene:100255271	Gene3D:2.60.40.10	MapMan:3.2.2.4.6	InterPro:AMPK1_CBM	ProteinID:CCB57643
ProteinID:CCB57643.1	ncoils:Coil	UniProt:F6HSK3	EMBL:FN596245	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	EntrezGene:LOC100255271	wikigene:LOC100255271	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61
SUPFAM:SSF81296	UniParc:UPI0002109B86	ArrayExpress:VIT_14s0006g01240	EnsemblPlantsGene:VIT_14s0006g01240	EnsemblPlants:VIT_14s0006g01240.t01	unigene:Vvi.10362
RefSeq:XP_002275302	RefSeq:XP_002275302.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:16488208..16526582

Molecular Weight (calculated)

34822.5 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.458

Length

307 amino acids

Sequence
(BLAST)

001: MNSLILQSSL QPALGCPENQ VSWFSWKSTN LDWEDVRGLR CNVTRWNLRV GSQKCAITCQ AFVGKQSMHQ KLWRTYSMPI NLDKESSSPF SQDYSSDNEN
101: ASEDSPEELL DQPLGSDELK TLLVDSERTK LIKKLSEANQ QNRILKRQLY IKEDALVNFK SELAVMELEV QALVSLAEEI AKSGIPKGSR KINGKYIQSH
201: LHSRLEAVHE KLKEQIKDVD AVQSKEVSII WCGMAESVQV MGTFDGWSQG EHLSPEYTGS FTKFSTTLML RPGRYEIKFL VDGEWQLSPE FPTVGEGLME
301: NNLLIVK

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.