Factsheet for Os02t0135900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29421	Sorghum	cytosol, plastid	75.82	75.32
TraesCS6D01G090900.1	Wheat	cytosol	70.59	73.97
TraesCS6B01G130700.1	Wheat	cytosol	69.28	72.6
TraesCS6A01G102300.1	Wheat	cytosol, plastid	68.3	71.58
Zm00001d015200_P003	Maize	plastid	73.53	67.98
HORVU6Hr1G018500.10	Barley	plastid	67.65	60.7
KRH38399	Soybean	cytosol	11.76	53.73
GSMUA_Achr7P10230_001	Banana	extracellular	53.27	52.92
PGSC0003DMT400078655	Potato	mitochondrion	43.46	52.78
KRG97930	Soybean	cytosol, plastid	48.69	50.17
AT5G39790.3	Thale cress	cytosol, plastid	44.44	48.57
Bra025642.1-P	Field mustard	cytosol	43.79	48.55
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	47.39	47.23
KRH30945	Soybean	cytosol, plastid	45.75	47.14
CDY30270	Canola	cytosol	44.12	43.55
CDX74426	Canola	golgi, mitochondrion, plastid	43.79	40.85
Solyc02g091530.2.1	Tomato	nucleus	45.1	37.6
Os03t0686900-01	Rice	plastid	17.97	10.4

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.4.6	EntrezGene:4328229	InterPro:AMPK1_CBM	ProteinID:BAD10363.1	ProteinID:BAF07735.1
ProteinID:BAS76864.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0010581	GO:GO:0019252
GO:GO:0030246	GO:GO:0030247	GO:GO:2001070	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
EnsemblPlantsGene:Os02g0135900	EnsemblPlants:Os02t0135900-01	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61	UniProt:Q6Z0Y8
SUPFAM:SSF81296	UniParc:UPI000023B08E	RefSeq:XP_015627711.1	SEG:seg	:	:

Description

Similar to 5'-AMP-activated protein kinase beta-1 subunit-related. (Os02t0135900-01);Similar to predicted protein. (Os02t0135900-02)

Coordinates

chr2:+:1909010..1912780

Molecular Weight (calculated)

34623.0 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.534

Length

306 amino acids

Sequence
(BLAST)

001: MECLTTSFTR NPGREYNLIC PSEALSEKQR IQRRVLCYFP ASTNSRRCRK FTTMAYPVSP IAGRRSNWRS FAASLNLEDG PASSDSTSSP SEQTSDGGEV
101: YGDPSENLNS RKLKSDELKS LLADSERSKL LKKLSEANQY NRFLKRQLQM KDNDVVKFKS ELAVMELELQ ALVALAEEIA NFDVPSGSRK INGKYIQSHL
201: LTRLEAVHDK VMEQIKDVDS LKHQEISVFW VGIAENVQIM GSFDGWSQGE AMSMEYSGYQ ARFSATLNLR PGRYEIKFLV DGEWRLSLEY PIDGEGSMQN
301: NILVVN

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.