CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025642.1-P	Field mustard	cytosol	78.05	92.75
CDY30270	Canola	cytosol	75.91	80.32
AT5G39790.3	Thale cress	cytosol, plastid	63.72	74.64
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	49.39	52.77
PGSC0003DMT400078655	Potato	mitochondrion	40.24	52.38
KRH38399	Soybean	cytosol	10.37	50.75
KRG97930	Soybean	cytosol, plastid	45.43	50.17
KRH30945	Soybean	cytosol, plastid	44.21	48.82
TraesCS6B01G130700.1	Wheat	cytosol	39.63	44.52
TraesCS6A01G102300.1	Wheat	cytosol, plastid	39.33	44.18
Os02t0135900-01	Rice	plastid	40.85	43.79
GSMUA_Achr7P10230_001	Banana	extracellular	40.85	43.51
TraesCS6D01G090900.1	Wheat	cytosol	38.72	43.49
KXG29421	Sorghum	cytosol, plastid	40.55	43.18
Zm00001d015200_P003	Maize	plastid	39.94	39.58
Solyc02g091530.2.1	Tomato	nucleus	41.77	37.33
HORVU6Hr1G018500.10	Barley	plastid	38.72	37.24
CDY16216	Canola	plastid	17.68	11.44
CDY14708	Canola	plastid	17.68	11.42
CDX70309	Canola	nucleus	17.38	5.97
CDY10381	Canola	nucleus	16.77	5.81

Protein Annotations

EnsemblPlants:CDX74426	EnsemblPlantsGene:GSBRNA2T00114281001	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61	PFAM:PF16561	ProteinID:CDX74426
ProteinID:CDX74426.1	SEG:seg	SUPFAM:SSF81296	UniParc:UPI0004EF3A75	MapMan:3.2.2.4.6	:

Description

BnaA04g09630D

Coordinates

chrLK031801:+:173450..175460

Molecular Weight (calculated)

37574.2 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.294

Length

328 amino acids

Sequence
(BLAST)

001: MLLPATQKYF NLLSRVLFVF FTRPSVSPNQ FITRLFCYNM KHFCTIQGCV PRMEFGFLRH CLEQNLTLSW NLKASSLATT SYLQRLPLSM VASSRNHYYK
101: NSLLLKRYLV RVGSSTEEEH SLSQDSLDDS VSRPLTSDEL KSLLIDNQRS KLVKKLSEAN QHNRFLKRQL KTQEDEITNI KSELAIMELE VQALVNLAEE
201: IANLGIPQGS RKISGKYIQS HLLSRLDAVH NKLKEQIKDV EAAQSKEVNV FWIGMAESVQ VMGSFDGWSQ PEDLSPEYTA SFTKFSTTLV LRPGRYEMKF
301: LVDGEWQISR EFPTSGEGML ENNVLVVE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.