CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015200_P003	Maize	plastid	86.36	80.36
Os02t0135900-01	Rice	plastid	75.32	75.82
TraesCS6D01G090900.1	Wheat	cytosol	67.53	71.23
TraesCS6B01G130700.1	Wheat	cytosol	67.21	70.89
TraesCS6A01G102300.1	Wheat	cytosol, plastid	67.21	70.89
HORVU6Hr1G018500.10	Barley	plastid	67.86	61.29
PGSC0003DMT400078655	Potato	mitochondrion	44.16	53.97
GSMUA_Achr7P10230_001	Banana	extracellular	52.27	52.27
KRH38399	Soybean	cytosol	11.04	50.75
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	49.03	49.19
KRG97930	Soybean	cytosol, plastid	47.08	48.82
KRH30945	Soybean	cytosol, plastid	46.1	47.81
Bra025642.1-P	Field mustard	cytosol	42.53	47.46
AT5G39790.3	Thale cress	cytosol, plastid	42.86	47.14
CDY30270	Canola	cytosol	42.21	41.94
CDX74426	Canola	golgi, mitochondrion, plastid	43.18	40.55
Solyc02g091530.2.1	Tomato	nucleus	45.78	38.42
OQU91183	Sorghum	plastid	17.86	9.43

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.4.6	UniProt:A0A194YMK8	InterPro:AMPK1_CBM	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570
GO:GO:0009987	GO:GO:0010581	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247	GO:GO:2001070
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KXG29421	ProteinID:KXG29421	ProteinID:KXG29421.1
ProteinID:KXG29422.1	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61	EnsemblPlantsGene:SORBI_3004G034000	SUPFAM:SSF81296
UniParc:UPI0001C80BF3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2749404..2753928

Molecular Weight (calculated)

34531.8 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.422

Length

308 amino acids

Sequence
(BLAST)

001: MECLTTSFAR NVGKEHSFVC SSKLVSENQW VPRRICCYVS SSTNSSQWCK FTNMAYPMSP IIRKRSHWRS FAASLNLEDG PAPSDSTSSS SEQTTADADG
101: TTNGDASEDL LSQKLSSDEL KALLADSERS KLLRRLSEAN QYNRFLKRQL QIKDDAVVKF KGELAVLELE LQALVGLAEE IANFDVPLGS RRINGKYIQS
201: HLLSRLEAVH DKIVEHIKDV DSLKTKEISV YWVGMAENVQ IMGSFDGWSQ GEAMSMEYSG DYGRFSATLK LRPGRYEIKF LVDGEWRLSP EYPTAGDGMT
301: QNNILIVE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.