Factsheet for Solyc02g091530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078655	Potato	mitochondrion	58.31	84.92
KRH38399	Soybean	cytosol	10.35	56.72
KRG97930	Soybean	cytosol, plastid	41.96	51.85
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	43.32	51.79
KRH30945	Soybean	cytosol, plastid	41.42	51.18
Bra025642.1-P	Field mustard	cytosol	36.78	48.91
AT5G39790.3	Thale cress	cytosol, plastid	36.78	48.21
TraesCS6A01G102300.1	Wheat	cytosol, plastid	37.87	47.6
TraesCS6B01G130700.1	Wheat	cytosol	37.6	47.26
TraesCS6D01G090900.1	Wheat	cytosol	37.06	46.58
GSMUA_Achr7P10230_001	Banana	extracellular	38.69	46.1
KXG29421	Sorghum	cytosol, plastid	38.42	45.78
Os02t0135900-01	Rice	plastid	37.6	45.1
Zm00001d015200_P003	Maize	plastid	38.69	42.9
CDY30270	Canola	cytosol	35.97	42.58
CDX74426	Canola	golgi, mitochondrion, plastid	37.33	41.77
HORVU6Hr1G018500.10	Barley	plastid	38.15	41.06
Solyc01g010470.2.1	Tomato	plastid	9.54	18.92
Solyc09g008260.2.1	Tomato	plastid	16.62	13.29
Solyc05g006930.2.1	Tomato	cytosol	13.62	10.59
Solyc01g010460.2.1	Tomato	plastid	8.72	8.42

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.4.6	InterPro:AMPK1_CBM	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570
GO:GO:0009987	GO:GO:0010581	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247	GO:GO:2001070
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K4BCV1	PFAM:PF16561	PANTHER:PTHR10343
PANTHER:PTHR10343:SF61	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc02g091530.2	EnsemblPlants:Solyc02g091530.2.1	UniParc:UPI00027679A3	:

Description

No Description!

Coordinates

chr2:+:52797502..52802339

Molecular Weight (calculated)

41619.4 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.192

Length

367 amino acids

Sequence
(BLAST)

001: MNISILLRQS EIWKSVVIYE RYKSDRIVIE KNILFMNLIS AIAAELGIDE SKKDIEIRYV VEGVALPCNC CFEFHQLGRN SLIMDCNLLN SLGQTCFPRF
101: KVENIDGVRG NMTSYKSRIG FCRMHTLFSV PNWKLSIPCT SWKIFCAPEN SLVVSEKIED AGLSDPEQVP EQPLRTEELK LLLADAERSK LLKKLSEANR
201: YNRLLKRELQ AKEDAMVNFK SELSVTELEI QALARLAEEI AKSAIPAGSR KIKGRYIQSH LFSRLEAISE KLKEQIKGVE AVQAKEVPLS WVGVAESVQV
301: MGSFDGWSQG EHLSPEYTGS YMNFSATLFL RPGRYEIKFL VDDEWKLSPE LPTTGEGLTK NNLLVVE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.