Factsheet for PGSC0003DMT400078655

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091530.2.1	Tomato	nucleus	84.92	58.31
KRH38399	Soybean	cytosol	15.08	56.72
KRG97930	Soybean	cytosol, plastid	60.71	51.52
KRH30945	Soybean	cytosol, plastid	59.92	50.84
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	61.51	50.49
Bra025642.1-P	Field mustard	cytosol	52.78	48.19
AT5G39790.3	Thale cress	cytosol, plastid	52.78	47.5
TraesCS6B01G130700.1	Wheat	cytosol	53.97	46.58
TraesCS6A01G102300.1	Wheat	cytosol, plastid	53.97	46.58
TraesCS6D01G090900.1	Wheat	cytosol	53.17	45.89
GSMUA_Achr7P10230_001	Banana	extracellular	55.56	45.45
KXG29421	Sorghum	cytosol, plastid	53.97	44.16
Os02t0135900-01	Rice	plastid	52.78	43.46
CDY30270	Canola	cytosol	51.59	41.94
Zm00001d015200_P003	Maize	plastid	54.76	41.69
CDX74426	Canola	golgi, mitochondrion, plastid	52.38	40.24
HORVU6Hr1G018500.10	Barley	plastid	53.97	39.88
PGSC0003DMT400009856	Potato	cytosol	10.32	28.89
PGSC0003DMT400045404	Potato	mitochondrion, plastid	19.44	9.32
PGSC0003DMT400068857	Potato	cytosol	17.46	9.3
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	8.33	6.89

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.4.6	InterPro:AMPK1_CBM	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009569	GO:GO:0009570
GO:GO:0009987	GO:GO:0010581	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247	GO:GO:2001070
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1D0I2	PFAM:PF16561	EnsemblPlantsGene:PGSC0003DMG400030609
PGSC:PGSC0003DMG400030609	EnsemblPlants:PGSC0003DMT400078655	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61	SUPFAM:SSF81296	UniParc:UPI00029628AC
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030609]

Coordinates

chr2:+:41928792..41933698

Molecular Weight (calculated)

28526.3 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.394

Length

252 amino acids

Sequence
(BLAST)

001: MASYNSRKGF HRMHKSFSNP IPCTSWKIFC APENLEKRFS VVVSEKIADA GLSDPEQPLR SEELRLLLAD AERSKLLKKL SEANRYNRLL KRELQAKEDA
101: LVNFKSELSV TELEIQVLAR LAEEIAKSAI PAGSRKIKGR YIQSHLLSRL EAIREKLKEQ IKGVEAVQAK EVPLSWVGVA ESVQVMGSFD GWSQGEHLSP
201: EYTGSYMNFS ATLFLRPGRY EIKFMVDDEW KLSPELPTTG EGLTKNNLLV VE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.