Factsheet for Zm00001d015200_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29421	Sorghum	cytosol, plastid	80.36	86.36
Os02t0135900-01	Rice	plastid	67.98	73.53
TraesCS6D01G090900.1	Wheat	cytosol	60.73	68.84
TraesCS6B01G130700.1	Wheat	cytosol	60.42	68.49
TraesCS6A01G102300.1	Wheat	cytosol, plastid	60.42	68.49
HORVU6Hr1G018500.10	Barley	plastid	61.03	59.24
PGSC0003DMT400078655	Potato	mitochondrion	41.69	54.76
KRH38399	Soybean	cytosol	10.27	50.75
GSMUA_Achr7P10230_001	Banana	extracellular	46.83	50.32
AT5G39790.3	Thale cress	cytosol, plastid	41.39	48.93
KRG97930	Soybean	cytosol, plastid	43.81	48.82
KRH30945	Soybean	cytosol, plastid	43.2	48.15
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	44.41	47.88
Bra025642.1-P	Field mustard	cytosol	39.58	47.46
CDY30270	Canola	cytosol	39.27	41.94
CDX74426	Canola	golgi, mitochondrion, plastid	39.58	39.94
Solyc02g091530.2.1	Tomato	nucleus	42.9	38.69
Zm00001d033529_P001	Maize	plastid	14.8	9.06
Zm00001d013530_P001	Maize	plastid	15.41	8.76

Protein Annotations

EntrezGene:100194285	Gene3D:2.60.40.10	MapMan:3.2.2.4.6	UniProt:A0A1D6GZV9	InterPro:AMPK1_CBM	ProteinID:AQK68266.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0010581	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247	GO:GO:2001070
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61
SUPFAM:SSF81296	UniParc:UPI000842A77B	EnsemblPlantsGene:Zm00001d015200	EnsemblPlants:Zm00001d015200_P003	EnsemblPlants:Zm00001d015200_T003	SEG:seg

Description

5'-AMP-activated protein kinase-related

Coordinates

chr5:+:78979002..78984518

Molecular Weight (calculated)

37090.3 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.377

Length

331 amino acids

Sequence
(BLAST)

001: MECLTTSFPR NVGKEYICSS KLVSGNQWIP KRICCYVSCS TNSSRCHKFT DVACPMSPVI RKRLRWRCFA ASLNLEDGPA PSDSTSSSSE QTTDADGTTN
101: GDVSENLLSR KPSSDELKAL LADSERSRLL RRLSEANQYN RFLKRQVIFA SRHLIKGKST ALSRNRVCKH EVLQIKDDAV VKFKGELAVL ELEMQALVGL
201: AEEVANFDVP LGSRKINGKY IQSHLLSRLE AVHDKIMEQV KSVDALKTQE IPVYWIGMAE NVQIMGSFDG WSQGEAMSME YSGDYGRFSA TLKLRPGRYE
301: IKFLVDGEWR LSPEYPTAGD GLTQNNILVV E

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.