CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30945	Soybean	cytosol, plastid	93.94	93.94
KRH38399	Soybean	cytosol	16.5	73.13
PGSC0003DMT400078655	Potato	mitochondrion	51.52	60.71
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	58.25	56.35
Bra025642.1-P	Field mustard	cytosol	51.52	55.43
AT5G39790.3	Thale cress	cytosol, plastid	50.17	53.21
GSMUA_Achr7P10230_001	Banana	extracellular	51.18	49.35
Os02t0135900-01	Rice	plastid	50.17	48.69
CDY30270	Canola	cytosol	50.51	48.39
TraesCS6B01G130700.1	Wheat	cytosol	47.14	47.95
TraesCS6D01G090900.1	Wheat	cytosol	46.8	47.6
TraesCS6A01G102300.1	Wheat	cytosol, plastid	46.8	47.6
KXG29421	Sorghum	cytosol, plastid	48.82	47.08
CDX74426	Canola	golgi, mitochondrion, plastid	50.17	45.43
Zm00001d015200_P003	Maize	plastid	48.82	43.81
Solyc02g091530.2.1	Tomato	nucleus	51.85	41.96
HORVU6Hr1G018500.10	Barley	plastid	46.46	40.47
KRH74757	Soybean	plastid	19.53	11.22
KRH69376	Soybean	plastid	19.19	11.05
KRH32502	Soybean	plastid	18.52	9.15
KRH19891	Soybean	plastid	17.51	8.36

Protein Annotations

EMBL:ACUP02010826	EnsemblPlants:KRG97930	EnsemblPlantsGene:GLYMA_18G039800	EntrezGene:100795997	Gene3D:2.60.40.10	InterPro:AMPK1_CBM
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61
PFAM:PF16561	ProteinID:KRG97930	ProteinID:KRG97930.1	ProteinID:KRG97931.1	SUPFAM:SSF81296	UniParc:UPI000233EB60
UniProt:I1MZE0	MapMan:3.2.2.4.6	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:3236509..3242547

Molecular Weight (calculated)

33477.9 Da

IEP (calculated)

5.493

GRAVY (calculated)

-0.332

Length

297 amino acids

Sequence
(BLAST)

001: MEISIARSHL ETQGIFFSNI SRTIGWESIR KLPCNVAAQG SRRDFHRLAS SCQAFTAVYP RRSFICRANS MPISLQESAS YGDNSIEDED PYTDLEEEAL
101: AKPPTSEQIM TLLADTQRAK LTKKLSEANQ QNRFLKRQLN VKEDALVKFK SELAVMELEI QALVRLAEEI AQCGIPEGSR KINGKYIHSH LVARLEAVNE
201: LLKEQIKDVD AAQSKEVSVF WVGMAESVQV MGTFDGWSQG EHLSPEYTGS YTRFSTTLLL RPGRYEIKFL VDGEWKLSPE FPIIGEGLTK NNLLVVE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.