CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69376	Soybean	plastid	86.46	86.63
Solyc01g010470.2.1	Tomato	plastid	17.99	50.27
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	20.5	50.24
Solyc05g006930.2.1	Tomato	cytosol	35.59	38.98
PGSC0003DMT400068857	Potato	cytosol	34.62	37.84
GSMUA_Achr7P12210_001	Banana	cytosol	28.82	37.06
CDY16216	Canola	plastid	36.17	36.88
CDY14708	Canola	plastid	36.17	36.81
VIT_01s0026g01510.t01	Wine grape	plastid	37.52	35.86
PGSC0003DMT400045404	Potato	mitochondrion, plastid	34.62	34.03
AT1G27070.1	Thale cress	plastid	35.01	34.02
TraesCS4B01G029700.2	Wheat	mitochondrion	29.4	31.54
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	28.05	31.52
Os03t0686900-01	Rice	plastid	31.91	31.19
GSMUA_Achr9P10940_001	Banana	cytosol	29.01	31.06
Zm00001d033529_P001	Maize	plastid	31.33	29.94
OQU91183	Sorghum	plastid	31.33	27.79
Zm00001d013530_P001	Maize	plastid	31.14	27.66
TraesCS4D01G026700.2	Wheat	plastid	29.79	27.55
HORVU4Hr1G004470.4	Barley	mitochondrion	30.95	24.92
Bra024663.1-P	Field mustard	mitochondrion, nucleus	36.17	20.69
KRG97930	Soybean	cytosol, plastid	11.22	19.53
KRH30945	Soybean	cytosol, plastid	11.03	19.19
KRH32502	Soybean	plastid	16.63	14.31
KRH19891	Soybean	plastid	16.83	13.99
KRH38399	Soybean	cytosol	1.16	8.96

Protein Annotations

EMBL:ACUP02000066	EnsemblPlants:KRH74757	EnsemblPlantsGene:GLYMA_01G041500	EntrezGene:100792611	Gene3D:2.60.40.10	InterPro:AMPK1_CBM
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47
PFAM:PF16561	ProteinID:KRH74757	ProteinID:KRH74757.1	SEG:seg	SUPFAM:SSF81296	UniParc:UPI00023371E9
UniProt:K7K1Q1	MapMan:3.2.1.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4485002..4490713

Molecular Weight (calculated)

56890.7 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.480

Length

517 amino acids

Sequence
(BLAST)

001: MHFLTAPSSL SLLSPHLTPS LVPPLHFPAS TGGVRRLAVE PGSALHSSLL KVNRYKGLWL SCTGFLRRCK GWNGEFSSLE SEILEFMQST GKPEVFPTKE
101: ELVAAGRVDL VNAIVNEGGW LAYGWDLNGG SGEIRGLEDN SSGGNGIEGN GAQASGVSSS SSQSDNSVDI EAGESGIEGI LSRLEKQRNR SFGLDLDNIS
201: FENNEDKDEW DHRTTTDAVA TGLENGSIAS SSSSTSSHLS GSQIKHDPYG SQLGTENLRN SLKPETWRSW IVQRTGFRDT DFEDAEIVPS ETEKGGMSDA
301: SGQPDILNRR EFSSEHINRE TGLYSLDGNT NHNDIKSRIQ NLESELSSIL HLLRSSSDKI TMQMVQKSSS DGLAKLSDAW EFQENEIMNA QGRLRSIRAK
401: LSVLEGKMVL AIMDAHKVVE ENQKKINNAQ KALQILKTTC VVWPNKASEV LLTGSFDGWS TKRKMERLSL GVFLLNLQLY PGRYEMKFIV DGEWKIDPLR
501: PVVTSNGYEN NLLIVHD

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.