CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32502	Soybean	plastid	68.33	70.72
GSMUA_Achr2P11630_001	Banana	cytosol	15.27	52.49
PGSC0003DMT400009856	Potato	cytosol	6.59	45.56
Solyc09g008260.2.1	Tomato	plastid	26.37	35.73
GSMUA_Achr4P25270_001	Banana	nucleus, plastid	21.54	33.75
VIT_08s0007g05020.t01	Wine grape	plastid	27.65	30.55
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	14.31	29.18
AT5G03420.1	Thale cress	plastid	26.69	27.76
Bra009530.1-P	Field mustard	nucleus	27.65	18.05
CDY10381	Canola	nucleus	27.17	17.86
CDX70309	Canola	nucleus	27.33	17.8
KRG97930	Soybean	cytosol, plastid	8.36	17.51
KRH30945	Soybean	cytosol, plastid	8.36	17.51
KRH74757	Soybean	plastid	13.99	16.83
KRH69376	Soybean	plastid	13.83	16.67
KRH38399	Soybean	cytosol	1.29	11.94

Protein Annotations

EMBL:ACUP02008212	EnsemblPlants:KRH19891	EnsemblPlantsGene:GLYMA_13G141800	EntrezGene:100805984	Gene3D:2.60.40.10	InterPro:AMPK1_CBM
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF64
PFAM:PF16561	ProteinID:KRH19891	ProteinID:KRH19891.1	ProteinID:KRH19892.1	SEG:seg	SUPFAM:SSF81296
UniParc:UPI000233CD7C	UniProt:K7LZP8	MapMan:3.2.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25422275..25429185

Molecular Weight (calculated)

68833.6 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.489

Length

622 amino acids

Sequence
(BLAST)

001: MGSVWVCYFP SCTIFPCRQC KLSPTHLLQP SASFQISLLR VRASQTTTTT STTRTRTRKS RRLKSDSEIC NDIRQFLDSV GLPEDHIPST KELLLHGWND
101: LANIVRRRGH KQIQELLTRS SLNADVDILS AETSLDERLD AANGFEDPLT GQNETVDCLV NDVKSSTEFL LGSSSGSLYV DSSSSLGEGT NIAEEASANL
201: FVEDGLSKVE DHAEVLNDVT EGNFYPTELI IVDNDYDSSR EGLHPNFGSQ SSIMPTEISG ELPIQTVSSG NSESEDSLVG KMDGEITLSL TESHSNTSFN
301: DSNIDTEDKE FSHLEPLVGL PLEQKDLGAL EGLDDSKDDI AEDVATTSEV SVRENLSDDN RLNSIVHSAD SSSTNLDTLA NLSLREKVAN FIQNGDLDPV
401: EGTHLPEDNN VMAHGNSLTS NQVVPSGALD LDQSLWDDHL PHEDLTTDFN KDLDTEAPKV QNESEINHLK FMLYQKELEL SRLKEQIEKE KLALSVLQTK
501: AEAEISKARK LISEKDAELH VAEESLSGLK EVQIEFCGDG DVVEVAGSFN GWHHRIEMDL QQSTSAIDLD GSRSSRCWST MLWLYPGVYE IKFVVDGKWI
601: TDPQRESVTR GHICNNILRV DR

Best Arabidopsis Sequence Match ( AT5G03420.1 )
(BLAST)

001: MATISQIPFS ISFPCFEFRK PSFYYHQPQL FVSYLNSTKK HSFICFACST KQTRVRKRVK SNEELRSEIM QFVALAGLPE GHVPSMKELS AHGRVDLANI
101: VRRRGYKFIK ELVANSGMEE DCNELVADSE DNNTNIETGG SRACLEDSST DLSKEAEKQG SLSKDESSLA GVLSLENSFS NLGDSNHSGE ITEKIFKIES
201: VELNEIADIE NSSSEASVFA NHSQDLYDTS SCPDIEAGNV SMTEDEEVND VDKDFSLTFD HYTSPTSNHY TSPDLNSIKH VDIATGSSYD LTSENTMTNV
301: ENFQNQQIDD IAANRSGSAD DSLVESEDND WMSGLSSCTS SIEEKTTRFI QNGYLDTVGA DENDIPNESC PEESSETTKG GEYIGDSLGG PRIMSTPLNG
401: SALALKEIIH ATEVNSSDRN SDQRDGSVGL DTDPHHETRK RENQVEIDRL RFMLDQKELE LSRLKEQIEK EKLSLSVLQR QAETEIQKAQ MLISEKEVEL
501: QEAEESLSGL QEVVIEYCGD GNAVEVTGSF NGWQHRVGME LQASKSIGKQ KCWSTLLWLY PGTYEIKFIV DGQWITDPQK DSVTRGHISN NILKVDSQ

Arabidopsis Description

PTSTProtein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.