CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009530.1-P	Field mustard	nucleus	99.06	99.27
CDY10381	Canola	nucleus	63.56	64.16
GSMUA_Achr2P11630_001	Banana	cytosol	9.11	48.07
AT5G03420.1	Thale cress	plastid	25.13	40.13
PGSC0003DMT400009856	Potato	cytosol	3.56	37.78
Solyc09g008260.2.1	Tomato	plastid	16.54	34.42
GSMUA_Achr4P25270_001	Banana	nucleus, plastid	13.19	31.74
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	9.32	29.18
KRH19891	Soybean	plastid	17.8	27.33
KRH32502	Soybean	plastid	16.75	26.62
VIT_08s0007g05020.t01	Wine grape	plastid	15.08	25.58
CDX74426	Canola	golgi, mitochondrion, plastid	5.97	17.38
CDY30270	Canola	cytosol	5.45	16.77
CDY14708	Canola	plastid	8.69	16.34
CDY16216	Canola	plastid	8.59	16.17

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	Gene3D:2.60.40.10	MapMan:3.2.1.2
GO:A0A078C212	InterPro:AMPK1_CBM	EnsemblPlants:CDX70309	ProteinID:CDX70309	ProteinID:CDX70309.1	ncoils:Coil
InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00136462001	InterPro:IPR013783	InterPro:IPR036388	InterPro:IPR038168
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF02319	PFAM:PF08781	PFAM:PF16561	PANTHER:PTHR10343
PANTHER:PTHR10343:SF64	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	SUPFAM:SSF81296
InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	UniParc:UPI0004EDC831	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaA10g26580D

Coordinates

chrLK031790:-:4052397..4058128

Molecular Weight (calculated)

106110.0 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.742

Length

955 amino acids

Sequence
(BLAST)

001: MTTTIGSNSN HNNRSDDGSV TNNNNNPSNR SWGTVVSAQS VSTSESMGSP SSKSEQTTTV ATTSATDSAF IQLNNLDIQG DDAASQGPAS GVKKKKRGQR
101: ATGPDKTGRG LRQFSMKVCE KVESKGRTTY NEVADELVAE FALPNNDGTP PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWRGL PRTSLSDIEE
201: LKAERLSLRN RIEKKTAYAQ ELEEQYVGLQ NLIRRNEHLY SSGNAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NFVLKTMKFC
301: EQPPFNNAHN NNSQQTNILM LENNTEGIST DPVPPPQPAD MYQSHPQLHA QPRVIPTPVN NNDAAQVASP PVSPVIDAGN FGVRQNMATL SFISLASFHN
401: RRNPMFYHHL HQQQRQLLFV TRLQKKNNSF VCFACSIKQT RVRKRVKSNE ELRSEILEFV ASAGLPPGHV PSMKELTARE RVDLANVVRR RGYKFIRELL
501: ASSEDCNELT SPSGVSLEDS LTEGQDEEAL ESTEPPSSSE MYSTETDASV SLDQRADSFP EEVDVGKSSP EAEECGSVSQ EESSLAAVSS MESSISDLGD
601: SNHSAGITES NLQIESVELS NVADTESSSS EASTSEDDTL SSSEREADNV LVTEEDEEVN DVDEDSSLAY DHYTSQDLNH TEHVVESVAT ESLSGDKDWM
701: LGLSSSTSSI EEKTTRFLQN GYLDTVEDVS DNESSPEETT KGGEYSHGGQ RSVSVAPNGS ALAYEEVTYA TEANNSQRNR DQRYGNAELD KDSHDETMKR
801: ENQVEITRLR FMLRQKELEL SRLKEQIEKE KLSLSVLQRK AETEIQKAQM LVLQKDVELQ EAEESLSGLQ EVEIEYCGDG NVVEVTGSFN GWEHRVGLEL
901: EASKSTGKQK CWSTLLWLYP GTYEIKFIVD GQWITDPQRD SVTRGHITNN ILKVD

Best Arabidopsis Sequence Match ( AT5G03420.1 )
(BLAST)

001: MATISQIPFS ISFPCFEFRK PSFYYHQPQL FVSYLNSTKK HSFICFACST KQTRVRKRVK SNEELRSEIM QFVALAGLPE GHVPSMKELS AHGRVDLANI
101: VRRRGYKFIK ELVANSGMEE DCNELVADSE DNNTNIETGG SRACLEDSST DLSKEAEKQG SLSKDESSLA GVLSLENSFS NLGDSNHSGE ITEKIFKIES
201: VELNEIADIE NSSSEASVFA NHSQDLYDTS SCPDIEAGNV SMTEDEEVND VDKDFSLTFD HYTSPTSNHY TSPDLNSIKH VDIATGSSYD LTSENTMTNV
301: ENFQNQQIDD IAANRSGSAD DSLVESEDND WMSGLSSCTS SIEEKTTRFI QNGYLDTVGA DENDIPNESC PEESSETTKG GEYIGDSLGG PRIMSTPLNG
401: SALALKEIIH ATEVNSSDRN SDQRDGSVGL DTDPHHETRK RENQVEIDRL RFMLDQKELE LSRLKEQIEK EKLSLSVLQR QAETEIQKAQ MLISEKEVEL
501: QEAEESLSGL QEVVIEYCGD GNAVEVTGSF NGWQHRVGME LQASKSIGKQ KCWSTLLWLY PGTYEIKFIV DGQWITDPQK DSVTRGHISN NILKVDSQ

Arabidopsis Description

PTSTProtein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.