CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70309	Canola	nucleus	64.16	63.56
GSMUA_Achr2P11630_001	Banana	cytosol	9.2	48.07
AT5G03420.1	Thale cress	plastid	25.16	39.8
PGSC0003DMT400009856	Potato	cytosol	3.7	38.89
Solyc09g008260.2.1	Tomato	plastid	17.44	35.95
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	10.47	32.46
GSMUA_Achr4P25270_001	Banana	nucleus, plastid	13.42	31.99
KRH32502	Soybean	plastid	17.97	28.29
KRH19891	Soybean	plastid	17.86	27.17
VIT_08s0007g05020.t01	Wine grape	plastid	15.22	25.58
CDY14708	Canola	plastid	9.51	17.72
CDY16216	Canola	plastid	9.41	17.55
CDY30270	Canola	cytosol	5.6	17.1
CDX74426	Canola	golgi, mitochondrion, plastid	5.81	16.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	Gene3D:2.60.40.10	MapMan:3.2.1.2
GO:A0A078FAE3	UniProt:A0A078FAE3	InterPro:AMPK1_CBM	EnsemblPlants:CDY10381	ProteinID:CDY10381	ProteinID:CDY10381.1
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00032284001	InterPro:IPR013783	InterPro:IPR036388	InterPro:IPR038168
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF02319	PFAM:PF08781	PFAM:PF16561	PANTHER:PTHR10343
PANTHER:PTHR10343:SF64	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	SUPFAM:SSF81296
InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	UniParc:UPI0004EF237F	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaCnng02820DBnaCnng02820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAE3]

Coordinates

chrLK032003:-:148388..154116

Molecular Weight (calculated)

105197.0 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.784

Length

946 amino acids

Sequence
(BLAST)

001: MTTTNGSNSN HNNRQHDDGS VTNNNNNPSN RSWGTVVSAQ SVSTSGGSMG SPSSRSEQTT TVATTTSATD SAFIQLNNLD IQGDDAASQG PASGVKKKKR
101: GQRATGPDKT GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTPPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD
201: IDELKAERLS LRNRIEKKTA YAQELEEQYV GLQNLIRRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM
301: KFCEQPPFNN AHSNNSQQTS HNILMLENNN QGPSTDPAPP QPADMYQSHP QLHSQPRVIP TPVTNNDAAQ ATSQSVSVKP ENDRCWQLRS PTAMATLSLF
401: SLASLQNRNP MFYHHRHQQQ RQLLFVSHLK KKNSGFVCFA CSIKQTRVRK RVKSNEELRS EILEFVASAG LPPGHVPSMK ELSAHERVDL ANVVRRRGYK
501: FIRDLLANSE DCNELTSPSG VSLEDSLTEG QDEEALDSTE PPSSTEMYST ATDASVSLDQ RTHNFTEEVD EECGGVIENE SSLSAVSRME DSTSNSSERE
601: ADNVLVAEDA PLTDDHCTSQ DLNYTKNVVE SVATESLSGE NAENFQNQQI DDMAENRSGR ADDSVVEADD KDGMLSLSSS ASSIEEKTAR FIQNGYLDTV
701: DDGMLEPVSD DEYNIPNESC PEETKVSAET IKGGEYSHGG QRSVSMAPNG SAVAYEEVTY ATEANNSQRN SDHQYGNAEL DKDSHAETMK RENQVEITRL
801: RFMLRQKELE LSRLKEQIEK EKLSLSVLQR KAETEIQKAQ MLVSQKDVEL QEAEESLSGL QEVEIEYCGD GNVVEVTGSF NGWEHRVGLG LETSKSTGKQ
901: KCWSTLLWLY PGTYEIKFIV DGQWITDPQR DSVTRGHITN NILKVD

Best Arabidopsis Sequence Match ( AT5G03420.1 )
(BLAST)

001: MATISQIPFS ISFPCFEFRK PSFYYHQPQL FVSYLNSTKK HSFICFACST KQTRVRKRVK SNEELRSEIM QFVALAGLPE GHVPSMKELS AHGRVDLANI
101: VRRRGYKFIK ELVANSGMEE DCNELVADSE DNNTNIETGG SRACLEDSST DLSKEAEKQG SLSKDESSLA GVLSLENSFS NLGDSNHSGE ITEKIFKIES
201: VELNEIADIE NSSSEASVFA NHSQDLYDTS SCPDIEAGNV SMTEDEEVND VDKDFSLTFD HYTSPTSNHY TSPDLNSIKH VDIATGSSYD LTSENTMTNV
301: ENFQNQQIDD IAANRSGSAD DSLVESEDND WMSGLSSCTS SIEEKTTRFI QNGYLDTVGA DENDIPNESC PEESSETTKG GEYIGDSLGG PRIMSTPLNG
401: SALALKEIIH ATEVNSSDRN SDQRDGSVGL DTDPHHETRK RENQVEIDRL RFMLDQKELE LSRLKEQIEK EKLSLSVLQR QAETEIQKAQ MLISEKEVEL
501: QEAEESLSGL QEVVIEYCGD GNAVEVTGSF NGWQHRVGME LQASKSIGKQ KCWSTLLWLY PGTYEIKFIV DGQWITDPQK DSVTRGHISN NILKVDSQ

Arabidopsis Description

PTSTProtein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.