Factsheet for GSMUA_Achr4P25270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P11630_001	Banana	cytosol	31.99	70.17
PGSC0003DMT400009856	Potato	cytosol	9.32	41.11
Solyc09g008260.2.1	Tomato	plastid	36.52	31.59
PGSC0003DMT400009851	Potato	cytosol, mitochondrion, nucleus, peroxisome	18.89	24.59
VIT_08s0007g05020.t01	Wine grape	plastid	33.5	23.62
KRH32502	Soybean	plastid	33.5	22.13
KRH19891	Soybean	plastid	33.75	21.54
AT5G03420.1	Thale cress	plastid	31.99	21.24
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	11.08	20.85
GSMUA_Achr7P10230_001	Banana	extracellular	13.85	17.86
GSMUA_Achr7P12210_001	Banana	cytosol	17.38	17.16
GSMUA_Achr9P10940_001	Banana	cytosol	17.13	14.08
CDY10381	Canola	nucleus	31.99	13.42
Bra009530.1-P	Field mustard	nucleus	31.74	13.22
CDX70309	Canola	nucleus	31.74	13.19

Protein Annotations

EnsemblPlants:GSMUA_Achr4P25270_001	EnsemblPlants:GSMUA_Achr4T25270_001	EnsemblPlantsGene:GSMUA_Achr4G25270_001	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF64	PFAM:PF16561
SUPFAM:SSF81296	UniParc:UPI0002962D81	UniProt:M0SRY8	MapMan:3.2.1.2	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G25270_001]

Coordinates

chr4:+:24844212..24852498

Molecular Weight (calculated)

45564.3 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.610

Length

397 amino acids

Sequence
(BLAST)

001: MALAPWPSSL SHLAGDRRSF PSFRRSQELR LLWSSNPYLV RRSLAPCCSG EEFRRGRALK SKEEFCHELR EFISATGLAE NRVPSMKELC ENGRKDLANI
101: VRRRGYKVVT ELLFNSNGEN HSDKISEGRQ RFIDAELYKA AGGQETKIHV SPYCTLRRSN RSMERDLVKS NGMVLTDNHV QVCDNSESSV DSLHIKAVKF
201: RQTGELDTME GEDCELYHDL ASEIYEHDNQ NEINRLKILL HQKKMELSQL KQQIDDEKLA LSSLHARATV ELGDIKRIVA EKDAELHAAE GNLNGLKEVR
301: IDYWANGQII EVAGSFNGWQ HRVRMDHHPS SKHINPPGYR KPMLWSTVLW LYPGVYEIKF IVDGEWRIDS QWEIITSGGI TNNVLRVDKL KAQKKLI

Best Arabidopsis Sequence Match ( AT5G03420.1 )
(BLAST)

001: MATISQIPFS ISFPCFEFRK PSFYYHQPQL FVSYLNSTKK HSFICFACST KQTRVRKRVK SNEELRSEIM QFVALAGLPE GHVPSMKELS AHGRVDLANI
101: VRRRGYKFIK ELVANSGMEE DCNELVADSE DNNTNIETGG SRACLEDSST DLSKEAEKQG SLSKDESSLA GVLSLENSFS NLGDSNHSGE ITEKIFKIES
201: VELNEIADIE NSSSEASVFA NHSQDLYDTS SCPDIEAGNV SMTEDEEVND VDKDFSLTFD HYTSPTSNHY TSPDLNSIKH VDIATGSSYD LTSENTMTNV
301: ENFQNQQIDD IAANRSGSAD DSLVESEDND WMSGLSSCTS SIEEKTTRFI QNGYLDTVGA DENDIPNESC PEESSETTKG GEYIGDSLGG PRIMSTPLNG
401: SALALKEIIH ATEVNSSDRN SDQRDGSVGL DTDPHHETRK RENQVEIDRL RFMLDQKELE LSRLKEQIEK EKLSLSVLQR QAETEIQKAQ MLISEKEVEL
501: QEAEESLSGL QEVVIEYCGD GNAVEVTGSF NGWQHRVGME LQASKSIGKQ KCWSTLLWLY PGTYEIKFIV DGQWITDPQK DSVTRGHISN NILKVDSQ

Arabidopsis Description

PTSTProtein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.