Factsheet for GSMUA_Achr8P15220_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 1
endoplasmic reticulum 3
plasma membrane 3
extracellular 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010470.2.1	Tomato	plastid	43.13	49.19
GSMUA_Achr7P12210_001	Banana	cytosol	53.55	28.11
GSMUA_Achr9P10940_001	Banana	cytosol	57.82	25.26
GSMUA_Achr2P11630_001	Banana	cytosol	20.85	24.31
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	45.97	21.09
KRH69376	Soybean	plastid	51.18	20.93
KRH74757	Soybean	plastid	50.24	20.5
Solyc05g006930.2.1	Tomato	cytosol	45.5	20.34
PGSC0003DMT400068857	Potato	cytosol	45.5	20.3
CDY16216	Canola	plastid	47.39	19.72
TraesCS4B01G029700.2	Wheat	mitochondrion	45.02	19.71
CDY14708	Canola	plastid	47.39	19.68
VIT_01s0026g01510.t01	Wine grape	plastid	49.76	19.41
Os03t0686900-01	Rice	plastid	47.39	18.9
AT1G27070.1	Thale cress	plastid	46.45	18.42
PGSC0003DMT400045404	Potato	mitochondrion, plastid	45.5	18.25
Zm00001d033529_P001	Maize	plastid	45.02	17.56
TraesCS4D01G026700.2	Wheat	plastid	45.97	17.35
OQU91183	Sorghum	plastid	46.45	16.81
Zm00001d013530_P001	Maize	plastid	44.55	16.15
HORVU4Hr1G004470.4	Barley	mitochondrion	46.45	15.26
GSMUA_Achr7P10230_001	Banana	extracellular	22.27	15.26
GSMUA_Achr4P25270_001	Banana	nucleus, plastid	20.85	11.08
Bra024663.1-P	Field mustard	mitochondrion, nucleus	47.39	11.06

Protein Annotations

EnsemblPlants:GSMUA_Achr8P15220_001	EnsemblPlants:GSMUA_Achr8T15220_001	EnsemblPlantsGene:GSMUA_Achr8G15220_001	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561
SUPFAM:SSF81296	UniParc:UPI0002967247	UniProt:M0TQM5	MapMan:3.2.1.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G15220_001]

Coordinates

chr8:+:12964967..12967534

Molecular Weight (calculated)

24190.2 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.228

Length

211 amino acids

Sequence
(BLAST)

001: MNNTPYSKTC HFFSPFSKIS FHVQGNFITV LVCMSLICNQ GSRSSFRPQC IVLWIITISH QKNSTDELHS LCDAWEFQET EIMNARNKLR SIRAKLAVLE
101: GKISFEIMEA RKRTEEKQNR IDSAQNALLL LHTTNIVWPN SASEVLLAGS FDGWTGQRRM ERSSSGVFSL QLKLYPGRYE IKFIVDGVWK VDPLRPIVRN
201: SGHENNLLIV K

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.