Factsheet for Solyc05g006930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045404	Potato	mitochondrion, plastid	84.75	76.05
Solyc01g010470.2.1	Tomato	plastid	22.46	57.3
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	20.34	45.5
GSMUA_Achr7P12210_001	Banana	cytosol	31.78	37.31
KRH74757	Soybean	plastid	38.98	35.59
KRH69376	Soybean	plastid	38.77	35.47
VIT_01s0026g01510.t01	Wine grape	plastid	39.83	34.75
CDY16216	Canola	plastid	36.02	33.53
CDY14708	Canola	plastid	35.81	33.27
GSMUA_Achr9P10940_001	Banana	cytosol	33.9	33.13
AT1G27070.1	Thale cress	plastid	37.08	32.89
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	31.78	32.61
TraesCS4B01G029700.2	Wheat	mitochondrion	33.05	32.37
Os03t0686900-01	Rice	plastid	34.32	30.62
Zm00001d033529_P001	Maize	plastid	33.9	29.57
OQU91183	Sorghum	plastid	34.11	27.62
TraesCS4D01G026700.2	Wheat	plastid	32.63	27.55
Zm00001d013530_P001	Maize	plastid	32.84	26.63
HORVU4Hr1G004470.4	Barley	mitochondrion	33.05	24.3
Solyc01g010460.2.1	Tomato	plastid	16.53	20.53
Bra024663.1-P	Field mustard	mitochondrion, nucleus	36.02	18.81
Solyc09g008260.2.1	Tomato	plastid	14.19	14.6
Solyc02g091530.2.1	Tomato	nucleus	10.59	13.62

Protein Annotations

EnsemblPlants:Solyc05g006930.2.1	EnsemblPlantsGene:Solyc05g006930.2	Gene3D:2.60.40.10	InterPro:AMPK1_CBM	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	ncoils:Coil	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	PFAM:PF16561	SEG:seg
SUPFAM:SSF81296	UniParc:UPI000276589D	UniProt:K4BWL9	MapMan:3.2.1.1	:	:

Description

No Description!

Coordinates

chr5:+:1531674..1536511

Molecular Weight (calculated)

52888.6 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.700

Length

472 amino acids

Sequence
(BLAST)

001: MCSLKFVELI RKGKEEHSVC CCCCGEGSQS EGDMKLEAEI LAFMEKSQNP DAFPTRKDLE KAGRFDLIEA IRNRGGWYSF GWDSEEEPFE AEEMDFDIEE
101: LRRRVEKYQE SDSGSDFSSG DSSQPASSSG RSLEAVVEED SAIEGIEGIL NRLEKERISS LGINTSKYGY GANHSSRDNI DDTSSGTTTT GRAPYRTDLG
201: KNGSLTTSSP TKGGLSDSAG QLNHQYTPDM WRSWSTQRAC PEGTEFEVGE VDFDKRPNGG KTETSRHDVF TVKENSYGTP ERWIYNNHND ISTRLQHLEL
301: ELSSTLNSLR SKSLEVNSKE VLGRSPSDLQ KLSDAREFQE NDVINAQKRL RSIRAKLAIL EGKVALTLTD AEKLLARKQK KIDSASKALQ LLRTTQIVWH
401: NSASEVLLTG SFDGWTTQRK MEKLRTGVFS VSLKLYPGIY EIKFIVDGIW KVDHLRPVVH NNGHENNVLI VT

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.