Factsheet for TraesCS4B01G029700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G284000.1	Wheat	mitochondrion, nucleus	86.51	90.65
TraesCS4D01G026700.2	Wheat	plastid	92.32	79.61
HORVU4Hr1G004470.4	Barley	mitochondrion	83.61	62.77
Os03t0686900-01	Rice	plastid	65.56	59.74
Zm00001d033529_P001	Maize	plastid	57.05	50.83
OQU91183	Sorghum	plastid	57.05	47.17
Zm00001d013530_P001	Maize	plastid	55.6	46.05
Solyc01g010470.2.1	Tomato	plastid	17.43	45.41
GSMUA_Achr8P15220_001	Banana	endoplasmic reticulum	19.71	45.02
GSMUA_Achr7P12210_001	Banana	cytosol	30.08	36.07
PGSC0003DMT400068857	Potato	cytosol	32.78	33.4
Solyc05g006930.2.1	Tomato	cytosol	32.37	33.05
GSMUA_Achr9P10940_001	Banana	cytosol	31.74	31.68
KRH69376	Soybean	plastid	32.99	30.81
VIT_01s0026g01510.t01	Wine grape	plastid	33.82	30.13
PGSC0003DMT400045404	Potato	mitochondrion, plastid	32.37	29.66
CDY16216	Canola	plastid	31.12	29.59
KRH74757	Soybean	plastid	31.54	29.4
CDY14708	Canola	plastid	30.91	29.33
AT1G27070.1	Thale cress	plastid	31.12	28.2
Bra024663.1-P	Field mustard	mitochondrion, nucleus	31.12	16.59
TraesCS6B01G130700.1	Wheat	cytosol	7.68	12.67

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.1.1	InterPro:AMPK1_CBM	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009791	GO:GO:0009987	GO:GO:0010581	GO:GO:0019252	GO:GO:0030246	GO:GO:0030247
GO:GO:2000014	GO:GO:2001066	GO:GO:2001070	GO:GO:2001071	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF47	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS4B01G029700
EnsemblPlants:TraesCS4B01G029700.2	TIGR:cd02859	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:21937445..21944001

Molecular Weight (calculated)

53199.5 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.854

Length

482 amino acids

Sequence
(BLAST)

001: MPPPRQPYRR PAPAPAPAPR PSNAPAPAPP QRGPRDQEEL EAAIYDFMRR SDKPGAFPTR AELLAAGRAD LAAAVESSGG WLSLGWSWSS DDDARRPAAS
101: TAGPGVHPDY PPEAGASGRA PNATADSVRE QQEPTPSGRQ PETEETQEAG SGAGLEGMLT RLRRERERAR PPPRSKNRAG GQGQNGALMN HNGAPSRSPT
201: DGMYTRRIPV NGNIHRSHSQ NGIPEDNKSS SSANDAWRTW SLDKSRFSDF EAAEIHPLSR KPPKRADLDT VLIEDDVPGP SNGVVINDYP SDHVDSERDE
301: IHARFQNLEF DLADSLKTLR SRFDGVSSYM SNGEEADVVN GFSDDWEFEE TKVMHAQEEL RTIRAKIAVL EGKVALEIID KNKIIEEKQT RLDEVEKALS
401: ELRTVSVVWP NPASEVLLTG SFDGWTSQRR MEQSEGGIFS YNLRLYPGRY EIKFIVDGVW KNDPLRPTVN NNGNENNLMI VT

Best Arabidopsis Sequence Match ( AT1G27070.1 )
(BLAST)

001: MVSINSGPIS SFVSRYSMID SDTLLHLSSF GSTFNPNYKA KACIRFARKV CGSTVLGFLE VKPRKKSCCS RCNGVSRMCN KRNLGWDSEG SKDLETEILE
101: FMKNSEKPGM FPSKKDLIRS GRFDLVERIV NQGGWLSMGW DLDEQEEKVR VNENVTPQDL HIEKQLPNCN SPEMDKTLNH GDLDLSSNLS SSTEQVESRN
201: DSGIEGILTR LEKERNLSLG ISVRENGKSN GAMHDISPNG SVPWSSRIVT ASEIQEVDGS RGSGEYAQSR YQGAKSVSGK PGLSDSPTSE TWRTWSMRRA
301: GFTDEDFEAA EISSSGLTGV KKDDTKKDSG DSMNGKDRIA SSSEDVNKTH IKHRLQQLQS ELSSVLHSLR SPPDKVVTSK DSETTAGNLE NLSDDWEYKE
401: NEIIHAQNKL RSTRAKLAVL EGKMAMAIID AQRIVREKQR RIDHASRALR LLRTASIVWP NSASEVLLTG SFDGWSTQRK MKKAENGVFS LSLKLYPGKY
501: EIKFIVDGQW KVDPLRPIVT SGGYENNLLI IS

Arabidopsis Description

PTST2Protein PTST homolog 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.