Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G090900.1 | Wheat | cytosol | 95.21 | 95.21 |
| TraesCS6A01G102300.1 | Wheat | cytosol, plastid | 94.86 | 94.86 |
| HORVU6Hr1G018500.10 | Barley | plastid | 92.47 | 79.18 |
| Os02t0135900-01 | Rice | plastid | 72.6 | 69.28 |
| KXG29421 | Sorghum | cytosol, plastid | 70.89 | 67.21 |
| Zm00001d015200_P003 | Maize | plastid | 68.49 | 60.42 |
| PGSC0003DMT400078655 | Potato | mitochondrion | 46.58 | 53.97 |
| KRH38399 | Soybean | cytosol | 11.99 | 52.24 |
| AT5G39790.3 | Thale cress | cytosol, plastid | 46.23 | 48.21 |
| KRG97930 | Soybean | cytosol, plastid | 47.95 | 47.14 |
| Bra025642.1-P | Field mustard | cytosol | 44.52 | 47.1 |
| GSMUA_Achr7P10230_001 | Banana | extracellular | 49.66 | 47.08 |
| VIT_14s0006g01240.t01 | Wine grape | cytosol, plastid | 48.29 | 45.93 |
| KRH30945 | Soybean | cytosol, plastid | 45.55 | 44.78 |
| CDY30270 | Canola | cytosol | 43.15 | 40.65 |
| CDX74426 | Canola | golgi, mitochondrion, plastid | 44.52 | 39.63 |
| Solyc02g091530.2.1 | Tomato | nucleus | 47.26 | 37.6 |
| TraesCS4B01G029700.2 | Wheat | mitochondrion | 12.67 | 7.68 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G130700.1 | EnsemblPlantsGene:TraesCS6B01G130700 | Gene3D:2.60.40.10 | InterPro:AMPK1_CBM | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:Ig_E-set | ncoils:Coil | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF61 | PFAM:PF16561 | SEG:seg |
| SUPFAM:SSF81296 | TIGR:cd02859 | MapMan:3.2.2.4.6 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:127322129..127325824
Molecular Weight (calculated)
32647.8 Da
IEP (calculated)
8.762
GRAVY (calculated)
-0.357
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MECLTASFTA RNAGREYNFV CPSKPACEKQ WIPGRVLCYF TAYANSSRCC KVATGVYPIS PVVGRRSRWR SFAASLNLEN GPAPSSSTSS SSGQTSEQLT
101: SAELKSLLAD KERSKLLRKL SEANQQNRFL KRQSQIKDDA IVKFRSELAV LELELQALVG LAEEIANFDI PSGSRKVNGK YIQSHLLSRL EAVHDKVMVQ
201: IKDIESFRPR EIAVHWVGMA ENVQIMGSFD GWSHGEAMSR EYSGDYARFS ATLRLRPGSY EIKFLVDGEW KLSSEYLITG EGLTQNNKLV VE
101: SAELKSLLAD KERSKLLRKL SEANQQNRFL KRQSQIKDDA IVKFRSELAV LELELQALVG LAEEIANFDI PSGSRKVNGK YIQSHLLSRL EAVHDKVMVQ
201: IKDIESFRPR EIAVHWVGMA ENVQIMGSFD GWSHGEAMSR EYSGDYARFS ATLRLRPGSY EIKFLVDGEW KLSSEYLITG EGLTQNNKLV VE
001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE
Arabidopsis Description
5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.