Factsheet for Bra025642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74426	Canola	golgi, mitochondrion, plastid	92.75	78.05
AT5G39790.3	Thale cress	cytosol, plastid	74.64	73.57
PGSC0003DMT400078655	Potato	mitochondrion	48.19	52.78
KRG97930	Soybean	cytosol, plastid	55.43	51.52
VIT_14s0006g01240.t01	Wine grape	cytosol, plastid	57.25	51.47
KRH38399	Soybean	cytosol	12.32	50.75
KRH30945	Soybean	cytosol, plastid	53.99	50.17
TraesCS6B01G130700.1	Wheat	cytosol	47.1	44.52
GSMUA_Achr7P10230_001	Banana	extracellular	49.64	44.48
TraesCS6A01G102300.1	Wheat	cytosol, plastid	46.74	44.18
TraesCS6D01G090900.1	Wheat	cytosol	46.38	43.84
Os02t0135900-01	Rice	plastid	48.55	43.79
KXG29421	Sorghum	cytosol, plastid	47.46	42.53
Zm00001d015200_P003	Maize	plastid	47.46	39.58
HORVU6Hr1G018500.10	Barley	plastid	46.38	37.54
Solyc02g091530.2.1	Tomato	nucleus	48.91	36.78
Bra024663.1-P	Field mustard	mitochondrion, nucleus	19.57	5.97
Bra009530.1-P	Field mustard	nucleus	17.03	4.93

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.4.6	InterPro:AMPK1_CBM	EnsemblPlantsGene:Bra025642	EnsemblPlants:Bra025642.1	EnsemblPlants:Bra025642.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009569	GO:GO:0009570	GO:GO:0009987	GO:GO:0010581	GO:GO:0019252
GO:GO:0030246	GO:GO:0030247	GO:GO:2001070	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:M4EA35	PFAM:PF16561	PANTHER:PTHR10343	PANTHER:PTHR10343:SF61	SUPFAM:SSF81296	UniParc:UPI0002544B3F
SEG:seg	:	:	:	:	:

Description

AT5G39790 (E=7e-108) | 5'-AMP-activated protein kinase beta-1 subunit-related

Coordinates

chrA04:-:7322632..7324210

Molecular Weight (calculated)

31416.4 Da

IEP (calculated)

5.990

GRAVY (calculated)

-0.409

Length

276 amino acids

Sequence
(BLAST)

001: MEFGFLRHCL EQNLTLSWNL KASSLATTSY LQRLPLSMVA SSRNHYYKNS LLLKRYLVRV GSSTEEEHSL SQDSLDDSVS RPLTSDELKS LLIDNQRSKL
101: VKKLSEANQH NRFLKRQLKT QEDEITNIKS ELAIMELEVQ ALVNLAEEIA NLGIPQGSRK ISGKYIQSHL LSRLDAVHNK LKEQIKDVEA AQSKEVNVFW
201: IGMAESVQVM GSFDGWSQPE DLSPEYTASF TKFSTTLVLR PGRYEMKFLV DGEWQISREF PTSGEGMLEN NVLVVE

Best Arabidopsis Sequence Match ( AT5G39790.3 )
(BLAST)

001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE

Arabidopsis Description

5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.